G357330


Basic Information

Item Value
gene id G357330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 343281 ~ 345524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405577
tgtgtcacACGCGGAAACAACTTTGAAGACGACGACAACAAAATGTAAAATCCTCAAAAGTTGTTAGGAGAAACGTGCACTGCAACGTCAACAGAGCCAGGTGGTTATCATCAGATGTTAGGTTACAAAAAAAATCCTACTTTCTGATATAATGTTAAGGATATGTTAAAGAGAACCCCACTGAACGAGTCAGAACATAAATAATCGTATTTGTCTCTGTAAAATGTGTTATAAAACATAAGAAAGTGAAACTTCATCCCCAAAGGGTGTTTTGGACACCCTAATATTAGTTTGGTCTCTACATTCGCTAATCCTTTGGCTGGTCGGTGGGACAGAACGCTTCTATAGGACAGCCTGTCTACGGtatcagggtcatgttcattagtgCACAACGTAGCAAAACGTTAAACACACGGAAAGCGTTCAGCAACAAAAATGAGTTTCCTttttggacaagttcaggtagtctgttttcttctgtttggtttCTAGTGAATACAACCCAGGCTATTTTGGTGTGCAACAAGGTACAGAACAGGGcttccagacagacagagtagagagagagtagtcagagtagagggggagtgagagagggtagagagagagagagagagagtagagagagaagaaagagtacagagagtacagagagagtagagagagagagagagagagagacagagtagagagagagtagagagagagagagacagagtagagagagagtagagagagtagagggggagtgagagagggtagagagagagagacagagtagagagagagtagagagagtagagggagagagagagagtgagtgagtgagtgagtgagtgagtgagagagagagagagaggtagagagagtagagagagagagagagtagagagagtagagagagagtagagagagacagtagagagagagtagagagagtagagagagagtagagagagactagagagagtagagggagattgagagagagtgagtgagagagagagtagagggagagagagtgagtgagagagagagtagagggagagagagagggagagagagtagagagagagaggtagagagagagtagagggagagagaggtagagagagagaggtagagagagaggtagagagagagaggtagagagagagagagagagagagagagagagagagagaggtagagagagagaggtagagagagagagtagagggagagagagagtagagagagagaggagagagagagtagggattgagagtagagagtagagagagagtagagagagacagacagagagtagagagagagagagccatccACTCTGCTCCATGGCTCTTCCCAGCAGGCCATTGTCTCACGTCAGATAGCGTCCCTCCTACGGGGGGCTCATCCCTCAACCGATCTGTCACGTAGGACGTGGAACACATCTCTAATAATCTACATTTTGCTCTTCTGCCTAATTCTAGTTCCTAATTCTGAAaataactctctctctgtagctatgACACACGGGATACTACGGAAACCCAATCACTTGAGTAAACTCCAGTTAGCAGTGGAGTGCAGGGCTTGTTTGAATGGCCATACGGTAGATAGTTTGCCAGCTTGTAAGGCACCAAAGTTCTGGGACTGTTCTCAGAAATCAGCAGGTCTGACAGCTGGCAATGTGCCTTGCTACATTCAGCTGTGCTGTAGAACTCGGCACACTAAATCACAGCAGAACAAGATATCATGAAAACTCGTTTGTGCATTAGCTAGAATTTACTAGGATTTTCAGCATTGAGTGTGTGTGAACTCGCATTGTTAGCATCCCTGCCTTTCATTATGGATTGATTTGAGACTGGTACAGCCAGCAAGCAGACACTAGCTACTGTAGCTGacgcgttagctagctaattttagTGTACATTACGAATTTCATAAATACTGATTCTTCCAACCACATAACACCTTCGTTAGATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405577 True 1973 lncRNA 0.45 3 343281 345524

Neighbor

gene id symbol gene type direction distance location
LOC110524922 LOC106572882 coding upstream 30683 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 58148 224811 ~ 285133 (+)
palm2akap2 LOC106568584 coding upstream 156942 89048 ~ 186339 (+)
LOC110523070 inip coding downstream 65237 410761 ~ 416534 (+)
LOC110524924 ptbp3 coding downstream 136901 482425 ~ 599279 (+)
LOC110523098 NA coding downstream 387487 733011 ~ 737553 (+)
LOC110523075 hook3 coding downstream 876139 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 882093 1227617 ~ 1228033 (+)
G357325 NA non-coding upstream 2761 339661 ~ 340520 (+)
G357181 NA non-coding upstream 49047 293999 ~ 294234 (+)
G357180 NA non-coding upstream 49667 293360 ~ 293614 (+)
G357172 NA non-coding upstream 80261 262805 ~ 263020 (+)
G357167 NA non-coding upstream 91677 251057 ~ 251604 (+)
G357352 NA non-coding downstream 47790 393314 ~ 482303 (+)
G357353 NA non-coding downstream 53272 398796 ~ 401594 (+)
G357329 NA non-coding downstream 56210 401734 ~ 420783 (+)
G357332 LOC106572866 non-coding downstream 76319 421843 ~ 424125 (+)
G357400 NA non-coding downstream 188162 533686 ~ 534044 (+)
G357136 NA other upstream 141639 200717 ~ 201642 (+)
G357564 NA other downstream 593544 939068 ~ 939873 (+)
G357565 NA other downstream 594711 940235 ~ 940741 (+)
G358042 NA other downstream 1042871 1388395 ~ 1390468 (+)
G358076 NA other downstream 1129271 1474795 ~ 1475734 (+)

Expression


Co-expression Network