G357329


Basic Information

Item Value
gene id G357329
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 401734 ~ 420783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405572
CCATTTTCACTACACACACCACCAAAAGTACCGGAAAATCTCTTGACAAAAATAAGATCCTTATTTGAACAGTATTTTCCAATGTTGTTCTCCACTACTAAAAACACTTTAAAGCATTAGCACATCATTCAAAAGGCTAAATAAATGTTACACATTACAGTAAATCAAACATTTGTGCACTACAATGTGTTTTTAATGATAGTCATGGTGTCTGTCATCATTGATGGGTTAAGGTCATAGTGGGGGTGGCCAGACAAATGGAATGGAGCAATAACAACATTTCACTTGTTTTGAAATGGCAGTCGAGCATCACTGGGGATCAGAGGGCaaacctggtcccagacctgtttgtgtcGTCATTCCAACTTGGCacgacagcacaaacagatctgtggACCAGGCTTTTATCATAAGGACAAGACAGACCAACACGAAGAACGTAGGCCGTACACAGCCGTCCCATCGCCTTTGACCACAGAACATCGGCCGCCATTTTCTGTTCATTTCCTGACGATTCTACATGTTAAAATTGCCACCGTTCGTCAAAACACCAAGCAGGTAATCTACCGCAGATGGTGTTGGTCTGGTTTGTCCTACAGGCATCCGAGGACACACTTTCCGTCTCTGGGGTTATTTGCTGACTATGGGCAGCAGGTCTCCCTTGGTTTTCATGGTTTTGATCTTGGCTCTGATGGTGTCGTCCATGGCCTGCCTGCAGCGGTGGGCGTAGTGAGCCAGCGTCTCCTCTTTCTCGTCCCAAGGTGGCAGAGCGTGG
>TU405573
CCGCAATTTTCAGGGACTCCTTTTGGCTCGTGAGCgatactttcaaaactactggctaaaaagtttacaaaagtaccggagaatctctttaaaaacaacactacatagacCATCAAAAAAGTACTGGAGAATCTCTTTaaaaacaattacatagACCACCAAAAGTACCGGAAAATCTCTTGACAAAAATAAGATCCTTATTTGAACAGTATTTTCCAATGTTGTTCTCCACTACTAAAAACACTTTAAAGCATTAGCACATCATTCAAAAGGCTAAATAAATGTTACACATTACAGTAAATCAAACATTTGTGCACTACAATGTGTTTTTAATGATAGTCATGGTGTCTGTCATCATTGATGGGTTAAGGTCATAGTGGGGGTGGCCAGACAAATGGAATGGAGCAATAACAACATTTCACTTGTTTTGAAATGGCAGTCGAGCATCACTGGGGATCAGAGGGCaaacctggtcccagacctgtttgtgtcGTCATTCCAACTTGGCacgacagcacaaacagatctgtggACCAGGCTTTTATCATAAGGACAAGACAGACCAACACGAAGAACGTAGGCCGTACACAGCCGTCCCATCGCCTTTGACCACAGAACATCGGCCGCCATTTTCTGTTCATTTCCTGACGATTCTACATGTTAAAATTGCCACCGTTCGTCAAAACACCAAGCAGGTAATCTACCGCAGATGGTGTTGGTCTGGTTTGTCCTACAGGCATCCGAGGACACACTTTCCGTCTCTGGGGTTATTTGCTGACTATGGGCAGCAGGTCTCCCTTGGTTTTCATGGTTTTGATCTTGGCTCTGATGGTGTCGTCCATGGCCTGCCTGCAGCGGTGGGCGTAGTGAGCCAGCGTCTCCTCTTTCTCGTCCCAAGGTGGCAGAGCGTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405572 False 775 lncRNA 0.46 2 401734 420783
TU405573 True 912 lncRNA 0.44 2 419827 420783

Neighbor

gene id symbol gene type direction distance location
LOC110524922 LOC106572882 coding upstream 89136 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 116601 224811 ~ 285133 (+)
palm2akap2 LOC106568584 coding upstream 215395 89048 ~ 186339 (+)
LOC110524924 ptbp3 coding downstream 61642 482425 ~ 599279 (+)
LOC110523098 NA coding downstream 312228 733011 ~ 737553 (+)
LOC110523075 hook3 coding downstream 800880 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 806834 1227617 ~ 1228033 (+)
LOC118964548 NA coding downstream 807304 1228087 ~ 1232244 (+)
G357353 NA non-coding upstream 140 398796 ~ 401594 (+)
G357330 NA non-coding upstream 56210 343281 ~ 345524 (+)
G357325 NA non-coding upstream 61214 339661 ~ 340520 (+)
G357181 NA non-coding upstream 107500 293999 ~ 294234 (+)
G357180 NA non-coding upstream 108120 293360 ~ 293614 (+)
G357332 LOC106572866 non-coding downstream 1060 421843 ~ 424125 (+)
G357400 NA non-coding downstream 112903 533686 ~ 534044 (+)
G357401 NA non-coding downstream 128155 548938 ~ 565947 (+)
G357403 NA non-coding downstream 154852 575635 ~ 576663 (+)
G357419 NA non-coding downstream 207809 628592 ~ 629232 (+)
G357136 NA other upstream 200092 200717 ~ 201642 (+)
G357564 NA other downstream 518285 939068 ~ 939873 (+)
G357565 NA other downstream 519452 940235 ~ 940741 (+)
G358042 NA other downstream 967612 1388395 ~ 1390468 (+)
G358076 NA other downstream 1054012 1474795 ~ 1475734 (+)
LOC110523096 NA other downstream 1479580 1897358 ~ 1904914 (+)

Expression


Co-expression Network