G357474


Basic Information

Item Value
gene id G357474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 717051 ~ 718970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405791
CCAGGCTATAGGTACACAGTCACCACTACAGTCACTAGTCACCACTACAGTCCccaatttataaaataaaaatttaTGGTTTAACACACTTTATGGTACATTAATTAGTTGCAATCCCTCATCAAATTAATCCATTCAATTAGTGATGGGCACCGAAATGGAAAATCTATACACATATACGTTGCATTTTACGATTCCATATTGATAACATATAGTTTTGTAGAAAATACATTGCAACTGTGTAAATGTTCACTTTTCTGAACCAGACGACTGCTTTTAATACAATGGGAAGCTCATCCACAATTGATGGACCATCAGCAGACAATTAAGTATGCTAAGCAGACTGTTTTTTATCATATGCTCAGCAGACTGTTTTACTGTTTGTTTTTTATCATATGCTAAGCAGACTGTTTTACTGTTTGTTTTTTATCGTATGCTAAGCAGCCTGTTGGAAGGTCTGTGAGAGGGCTTTGTGCCTGCAGATACAGTCATGTGTGCTTTATTCCAGAATAGTGTACGTCAACCGGAAgaataaggcaataaatagcaCAATACGCCTTGATCATATCGATGTCAAACAATATCAATATCATATAGAATTATCTATTTTAGTGCCCACCACTATATGAAATAAATAACACATTTATATttcaatatatactgaacaaaaatataaacgtgacatgtaaagtgttggtcccatgattcatgagatgaaataaaagatcccagacattttccaagCTTACTTCtcacaaatgtgtttatatccgttagtgagcatttctcctttgcccagataatccatccacctgacaggtgtggcatatcaagaagctgattaaataacatgatcattacacaggtgcaccttgtgctggagacaataaaaggccactctaaaatgttcacttttgtcacacaacccaatgccacagatgtctgaagttttgagggagcatgcaattggcatgctgactgcaggaatgtccaccagagttgtttccagagaatttaatgttcatttctctaccataagccgcctacaatgtcgttttagagaagtacgtctaaccggcctcataaccacaaaccacgtgtaaccacgttagcccaggacctccacaacctGCGGGATAGTCCGACACCAGCCTCCCggtcagctgatgaaactgagtatttctgtctgtaataaagcccttttgtggggaaaaactcattctgattggctggcctgggagggcataggcccagccactggggaaccaggcccatccatggctgcgcccctacccagtcatgtgaaatccatagattagggcctaattcatttatttcaattgactgttttccttatatgaactgtaactcagtaaaatttttgaaattgttgcatgttgagttcaTATTTTTGTTAGAGTATAATTTAATTATCAAGCATATTTCTTAATTTCATCAGTCTGCTGCATCATTCAAGCTTAACATTTGAACTTCTTTCCACTAAGTAATTTCCTCTCTCATAACTCATGTAAAACAGTCTTGGATGCCATTGTGAAAAAGTGTATTCATATTGCCCTCTCAAAAGACTGCTTTAGAGAACAAGCACACAATCACCAACTGCCACTGGTTTTTAAAAGGCCGAGGCTGCGGATCAGACTTTTCTGGTCTAGGCTTCCCGGCGGTACAAAATAGGCCATAAGAACTTTTTTAAATACCCACCGCGTTTTTCTGAAAGGACCCTCCCCCATTCCTCACGAGTATGAacactttcagaaggcactgtatgtccaatATGAAAGAAATATTGTATTTAAGATGATTTGCCACTTTTAAGGGCCACACACTGAGAAGAGACGGCCCTCTGGGTGTAAACTCGGTGGATTTGGAAACTAAAAGTGTTCCAGACGAGAATCAACCCCC

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405791 True 1920 lncRNA 0.39 1 717051 718970

Neighbor

gene id symbol gene type direction distance location
LOC110524924 ptbp3 coding upstream 117772 482425 ~ 599279 (+)
LOC110523070 inip coding upstream 300517 410761 ~ 416534 (+)
LOC110524922 LOC106572882 coding upstream 404453 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 431918 224811 ~ 285133 (+)
palm2akap2 LOC106568584 coding upstream 530712 89048 ~ 186339 (+)
LOC110523098 NA coding downstream 14041 733011 ~ 737553 (+)
LOC110523075 hook3 coding downstream 502693 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 508647 1227617 ~ 1228033 (+)
LOC118964548 NA coding downstream 509117 1228087 ~ 1232244 (+)
LOC118964547 NA coding downstream 527031 1246001 ~ 1249676 (+)
G357476 NA non-coding upstream 143 716697 ~ 716908 (+)
G357465 NA non-coding upstream 7812 704685 ~ 709239 (+)
G357464 NA non-coding upstream 9475 704653 ~ 707576 (+)
G357463 NA non-coding upstream 17492 699358 ~ 699559 (+)
G357459 NA non-coding upstream 18137 689557 ~ 698914 (+)
G357475 NA non-coding downstream 142 719112 ~ 719685 (+)
G357486 NA non-coding downstream 43808 762778 ~ 768784 (+)
G357498 NA non-coding downstream 75259 794229 ~ 795596 (+)
G357501 NA non-coding downstream 85461 804431 ~ 805222 (+)
G357136 NA other upstream 515409 200717 ~ 201642 (+)
G357564 NA other downstream 220098 939068 ~ 939873 (+)
G357565 NA other downstream 221265 940235 ~ 940741 (+)
G358042 NA other downstream 669425 1388395 ~ 1390468 (+)
G358076 NA other downstream 755825 1474795 ~ 1475734 (+)
LOC110523096 NA other downstream 1181393 1897358 ~ 1904914 (+)

Expression


Co-expression Network