G357520


Basic Information

Item Value
gene id G357520
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 832312 ~ 833699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405854
gtccataagggttacttcactagaattcaatgtgccagatagtgaggtccataagggttactacactagaattcaatgtgccagatagtgaggtccataagggttacttcactagaattcaatgtgccagatagtgaggtccataagggttactacactagaattcaatgtgccagatagagaggtccataagggttacttcactagaattcaatgtgccagatagtgaggtccataagggttactacactagaattcaatgtgccagatagtgaggtccataagggttacttcactagaattcaatgtgccagatagtgaggtccataagggttactacactagaattcaatgtgccagatagtgaggtccataagggttactacactagaattcaatgtgacagatagtgaggtccataagggttactacactagaattcaatgtggcagatagtgaggtccataagggttactacactagaattcaatgtgccagatagtgaggtccataagggttactacactagaattcaatgtgcccTGTAGTGAGGTAcataagggttactacactagaatGATTTAACATACTATGAATAGTCAGTGTCTCTACCTTGGAACTGCAGCTCCATTTCTTTCATTCtatctcgctctcacacacactcacacacacacactattgtacTCACACACCGGAGAGACTTGGGTCACTATTTTCATGAATATATCATCTGGGCCTATAAGTGTTGAACATTCAAAATATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405854 True 764 lncRNA 0.41 2 832312 833699

Neighbor

gene id symbol gene type direction distance location
LOC110523098 NA coding upstream 96521 733011 ~ 737553 (+)
LOC110524924 ptbp3 coding upstream 233033 482425 ~ 599279 (+)
LOC110523070 inip coding upstream 415778 410761 ~ 416534 (+)
LOC110524922 LOC106572882 coding upstream 519714 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 547179 224811 ~ 285133 (+)
LOC110523075 hook3 coding downstream 387964 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 393918 1227617 ~ 1228033 (+)
LOC118964548 NA coding downstream 394388 1228087 ~ 1232244 (+)
LOC118964547 NA coding downstream 412302 1246001 ~ 1249676 (+)
LOC118964550 NA coding downstream 419126 1252825 ~ 1255902 (+)
G357514 NA non-coding upstream 10450 819465 ~ 821862 (+)
G357502 NA non-coding upstream 26274 805239 ~ 806038 (+)
G357501 NA non-coding upstream 27090 804431 ~ 805222 (+)
G357498 NA non-coding upstream 36716 794229 ~ 795596 (+)
G357486 NA non-coding upstream 63528 762778 ~ 768784 (+)
G357531 NA non-coding downstream 21333 855032 ~ 855451 (+)
G357541 NA non-coding downstream 47126 880825 ~ 887021 (+)
G357546 NA non-coding downstream 60532 894231 ~ 958257 (+)
G357554 NA non-coding downstream 76865 910564 ~ 1006885 (+)
G357568 mob3b non-coding downstream 134921 968620 ~ 970497 (+)
G357136 NA other upstream 630670 200717 ~ 201642 (+)
G357564 NA other downstream 105369 939068 ~ 939873 (+)
G357565 NA other downstream 106536 940235 ~ 940741 (+)
G358042 NA other downstream 554696 1388395 ~ 1390468 (+)
G358076 NA other downstream 641096 1474795 ~ 1475734 (+)
LOC110523096 NA other downstream 1066664 1897358 ~ 1904914 (+)

Expression


Co-expression Network