G357566


Basic Information

Item Value
gene id G357566
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1012774 ~ 1013971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405907
TTTGCTCTGATGCAAGGTTGTTGCCTAGCAGCAACAATAGGTCAAAGTGACAGCTGACCAGTTGGGTCACATGATTTCATATTACAGTAGAAGAGAAAGTCCCGGCCAATTACAAACCTCCCATTTTTTTTTGTCCAGGAGTAGGCATAAATTGACTAACATTACTAAACaatgacatacagtacacacaagtGTTCCTCCCTCCACCACACTAAAACCATCCCTTCAAATAGAGTTATTGTACTTGGAGGGGATTTTTCCCTTTAACTTTACAGCCTGAAGAAAATGAAATagaaatgctacaaaatactGTCGTTGGTTGTCTGTGACAAAAGTGGAACACACCCCGACCGGCTTGCATTACAACGTTCCACACGGACACAACACAGGAAATCACCATCAATACCACTGACCCCTAGACGAGATACCACTGACCCCTAGACGAGACATGTCTGGATACAGGACGGCAGTAGTTCTATAGGTCTCAGAAAGGTAGTAGGAGACAGCTTAGCCATCCGCTACACCTCTATTGGGAGAGGTGATGTGAGAGTCCTCACACTGACCCTTTAATAAAGCAGGGACTGATAAACCTGGGACAACCCCGCCCTCCCCCAATACACTGAAGGCAGACCCAGAGAACCAGGGTCCGTAAGCCTGGCCTAttacagcctggtcccagaccggTTTGTGGTCTTGCCAACTCCACAGACTTGGCACCCAGGCTAGGTGTGTTTGAGGCTTCATGGACCCTCTACAGGCTCAATCCCTTTGAGCGCGTCATAAAGCTGTTGGGGTAGAATTACATATCCCTCCCCTAGCGCCGGGTCCCTGTTCATCCTCTGGAACTCTCCGATAGCCTTAAACCTCTTCAACTGTCTCTCCTGCCTCCGACACTTCTGCTGTACGGTCTTTAACTTCTTCCTCAGCTTGTCCAGCTGTTCCTCCAGCTGCTCAATCCTCTTCTTCTGCTGAACCGTGTCCTCTACGGTGTAGTTGTGGTCACAGGAGATGGACATGCTGTGGGGAAGGTTCTCTACCAGGGGTAAGGGGTCTACAGTGTGAtgggtctctgtctgtatctcctgCTGGGTCTCCTCTGtgtcagagagggggagggaggggagggtcagAGAGAAGTCCATCTCTGGAGGTAACGGGTCCGCCAAGGACTCTGCC

Function

NR:

description
THAP domain-containing protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU405907 True 1176 lncRNA 0.50 2 1012774 1013971

Neighbor

gene id symbol gene type direction distance location
LOC110523098 NA coding upstream 276983 733011 ~ 737553 (+)
LOC110524924 ptbp3 coding upstream 413495 482425 ~ 599279 (+)
LOC110523070 inip coding upstream 596240 410761 ~ 416534 (+)
LOC110524922 LOC106572882 coding upstream 700176 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 727641 224811 ~ 285133 (+)
LOC110523075 hook3 coding downstream 207692 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 213646 1227617 ~ 1228033 (+)
LOC118964548 NA coding downstream 214116 1228087 ~ 1232244 (+)
LOC118964547 NA coding downstream 232030 1246001 ~ 1249676 (+)
LOC118964550 NA coding downstream 238854 1252825 ~ 1255902 (+)
G357587 NA non-coding upstream 3006 1009340 ~ 1009768 (+)
G357584 NA non-coding upstream 5302 1007164 ~ 1007472 (+)
G357554 NA non-coding upstream 5889 910564 ~ 1006885 (+)
G357595 NA non-coding downstream 27847 1041818 ~ 1177985 (+)
G357625 NA non-coding downstream 140212 1154183 ~ 1154749 (+)
G357626 NA non-coding downstream 141225 1155196 ~ 1155574 (+)
G357628 NA non-coding downstream 144514 1158485 ~ 1161157 (+)
G357630 NA non-coding downstream 148965 1162936 ~ 1163771 (+)
G357565 NA other upstream 72033 940235 ~ 940741 (+)
G357564 NA other upstream 72901 939068 ~ 939873 (+)
G357136 NA other upstream 811132 200717 ~ 201642 (+)
G358042 NA other downstream 374424 1388395 ~ 1390468 (+)
G358076 NA other downstream 460824 1474795 ~ 1475734 (+)
LOC110523096 NA other downstream 886392 1897358 ~ 1904914 (+)
G358596 NA other downstream 1032703 2046674 ~ 2047025 (+)
G359084 NA other downstream 1602907 2616878 ~ 2617330 (+)

Expression


Co-expression Network