G357595


Basic Information

Item Value
gene id G357595
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1041818 ~ 1177985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU405948
GTGTATTACTATTTCACAATGTGTATTACTATTTCGCAATGTGTATTACTATTTCACAATGTGTATTACTATTTCACAATGTGTATTACTATTTCACAATGTGTATTACTATTTCACAATGTGTATTACTATTTCACAATGCGTATTACTATTTGACAGAGTACAGAGTGAGTGGTATATGTTCAAGCTGTGTACAGTATAACTGTCTCTTGATGACGACACAACAATTAATAACATGTTCCTGTTTCAGAAACATACTCCTTTTATTGgtttgattttttaaaaatcattCAAGGAAACAATTAACACTTTTTCAAGAAGACGGCAAATTGTAAACCTAAACAAATCAGTCTAAACAACAGTTTATAGGGCCAAGGCAAGTCGCCCTGTAGCCGATAGACATGTTTCCCTCTCATTGTACTGCCAACAATATTCAGACGGCTactgtcccaaaatggcaccttattccataGAAAATTAATGTATCAGGGTGCAATTTTCAGACGCACCCTCTGACATAGAATTGTCCCTTGGGTACACACCAACAGCTGTGTCAGTGCTCAACAGGATATGATGTCATAAACTGCAGCTTGACTTCCCTTTAAAACCCTTATTGATCCTTTACAACGTAATAGTGATTATCATCGTCGTCGTCATAGTGAATAAACACAACTTACCTTCAATGTTCTGTTAACTTATTCAGAAGGTGTAGCCACACCTTACAAGTGACTTTATGTATGGCTGTATGTTCAATGTGCTGTCATTTTATTCAGAAAAGGTAGCCGCTTGTCAAACACTTGTCTCTTACAGTGCAGAGGTGAGCACCTAACCACCTGTACCACAAAACAAAAAGCCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCC
>TU405954
CCGATAGACATGTTTCCCTCTCATTGTACTGCCAACAATATTCAGACGGCTactgtcccaaaatggcaccttattccataGAAAATTAATGTATCAGGGTGCAATTTTCAGACGCACCCTCTGACATAGAATTGTCCCTTGGGTACACACCAACAGCTGTGTCAGTGCTCAACAGGATATGATGTCATAAACTGCAGCTTGACTTCCCTTTAAAACCCTTATTGATCCTTTACAACGTAATAGTGATTATCATCGTCGTCGTCATAGTGAATAAACACAACTTACCTTCAATGTTCTGTTAACTTATTCAGAAGGTGTAGCCACACCTTACAAGTGACTTTATGTATGGCTGTATGTTCAATGTGCTGTCATTTTATTCAGAAAAGGTAGCCGCTTGTCAAACACTTGTCTCTTACAGTGCAGAGGTGAGCACCTAACCACCTGTACCACAAAACAAAAAGCCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGCCCCTGGGCCTCTGGGTCCCTGGGCCTCTGGGTCCCTGGGTCCCTGGGCCTCTGGGCCTCTGGGTCCCTGGGCCTCTGGGCCTCTGGGTCTCTGGGTCTCTGGGTCCCTGGGCCTCTGGGCCTCTGGGTCCCTGGGCCTCTGGGCCTCTGGGCCTCTGGGCCCCTGGGCCTCTAGGCCTCTGGGCCTCTGGGCCTCTGGGCCTCTGGGCCTCTGGGCCTCTGGGCCTCTGGGTCTCTGGGCCTCTGGGACTCTGGGCCTCTGGGCCTCTAGGCAGACGAAGGCAGTTCAACGCTCACATACACCATGTTACACTTACAACTTGGGTATCTATGACTGTCTCAAATCAACACGTATAAACTTAAGCAGCaaagtcccattgagaccaatgTTTCTTTTGCAAAGAAGTATTCCATGTTATTGTGTAAGTGCTGATAAACTATTATCTTTGGCTTGATCATGAGGGGTCAGGGTGCTTACAATTTTAAATCAGGTCATCTCCAAATACCTGTAATAGCGCACTTTAAAATGTTATCATCGCTTTAGCCTAACAAATGACAGGGATAACTGGAGAAAAAAGAAATGTGTCAAACCACTACGGCACCAAATCACAGACAGTTGTTTGTAGATTCTACTGCTTGACATTCCTTCTCTCACGTGTATAAAAAGACGTGTCTCAGATTGGCTCAGTTACTGAAAATGAAAAACAGTCTGAGAAACTAGTGTTAAAACCTTCTCCTCAACGAGGAACAGCTCTATTCAGGAATGAAAGATCCACACACACAGCGTCGATTGAACTTAGACACAACCTTCCTAGTCCCATCaaacaacctttttttttttatctgactcATCCTGGGGGAAAACAATTATGTGACTCTTGAAACGTATGAATACTATTTTACTGAAATCGACACAAGATGAGTTTACACGACAAAGAGTAGTGTTCCTATGTGCACACACACCTACTTCAGTACatataaaataatattattttaaAACATCCACCTCAATAAATCATGTATATTATGGAACTGTAACAACCACACCAACATGTCAGAAGGTTTAACTCATCCTTTTCATTCAATAATTGAACTGTAACAACGTTGAATACATTttgtacaaaaatataaacattatTATAATTGACTTCAAAAGCCTTAttcaagttttaaaaaatacatattttcctcGACGTTCACAAAAATTATTTGAGATTTAACGTCTGTCTTGACTAttcgtttttttatttatttctctccagACTAAGacatacaccgagtgtacaaaacagtaagaacacctgctctttccatgacatagactgaccaggtgaaagctatgatcccttattgatttaaTTTGCTAAATACACTtctatcagtgtagatgaaggggaggagacggggtgaaagaaggattttgaagccttgagacaattgagacatgaattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaattattaagttcctttgaacggggtatggtagtaggtgccagacgcaccggtttgtgtcaagaactg
>TU405947
ACTTGGGTATCTATGACTGTCTCAAATCAACACGTATAAACTTAAGCAGCaaagtcccattgagaccaatgTTTCTTTTGCAAAGAAGTATTCCATGTTATTGTGTAAGTGCTGATAAACTATTATCTTTGGCTTGATCATGAGGGGTCAGGGTGCTTACAATTTTAAATCAGGTCATCTCCAAATACCTGTAATAGCGCACTTTAAAATGTTATCATCGCTTTAGCCTAACAAATGACAGGGATAACTGGAGAAAAAAGAAATGTGTCAAACCACTACGGCACCAAATCACAGACAGTTGTTTGTAGATTCTACTGCTTGACATTCCTTCTCTCACGTGTATAAAAAGACGTGTCTCAGATTGGCTCAGTTACTGAAAATGAAAAACAGTCTGAGAAACTAGTGTTAAAACCTTCTCCTCAACGAGGAACAGCTCTATTCAGGAATGAAAGATCCACACACACAGCGTCGATTGAACTTAGACACAACCTTCCTAGTCCCATCaaacaacctttttttttttatctgactcATCCTGGGGGAAAACAATTATGTGACTCTTGAAACGTATGAATACTATTTTACTGAAATCGACACAAGATGAGTTTACACGACAAAGAGTAGTGTTCCTATGTGCACACACACCTACTTCAGTACatataaaataatattattttaaAACATCCACCTCAATAAATCATGTATATTATGGAACTGTAACAACCACACCAACATGTCAGAAGGTTTAACTCATCCTTTTCATTCAATAATTGAACTGTAACAACGTTGAATACATTttgtacaaaaatataaacattatTATAATTGACTTCAAAAGCCTTAttcaagttttaaaaaatacatattttcctcGACGTTCACAAAAATTATTTGAGATTTAACGTCTGTCTTGACTAttcgtttttttatttatttctctccagACTAAGacatacaccgagtgtacaaaacagtaagaacacctgctctttccatgacatagactgaccaggtgaaagctatgatcccttattgatttaaTTTGCTAAATACACTtctatcagtgtagatgaaggggaggagacggggtgaaagaaggattttgaagccttgagacaattgagacatgaattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaattattaagttcctttgaacggggtatggtagtaggtgccaggcgcaccggtttgagtgtgtcaagaactgcaacgctgctgggttttacacactcaacagtttcccgtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacacaactgtgggaagcattggagtcaacatggggccagcatccctgtggaacgctttcaacaccttgtagagtccatgtccggacgaattgaggctgttctgagggcatgAGGGGgatacaactcaatattaaggtgttcctaatgttttgtacactctgtgtacaTAAATACCATTGTTTATGTATATAGTGGAATTATAGGAAAGTACATTCAGTGCACCAACTATGTAATAGTACTTACAGTATAGAGACTTAAAGATATCTTTCAAAAATGTTTAAGCATCAATCAACAAAACAGTTTTCTTTACGGTGCCATGTTGGTCCACTGCTGCATTAAACCATGGTTTCTGTGAAGAAGTTAAGTTAATTCATTTAGAAAGTGGAGCGCTTATTACATGATTTAAATACTTTATCGACAATCATAGGAAAACGTTTTAAATAAAGTATGAAatagtttgtagaaacatgtctaCACCGAGTCCATGTTGAGACCACAGATAAATATCACACAAGATTTCatgtagaaacatgtcaacaCAGAGCCCCTGTTGAGACCACAGATAAATATCACACAAGATTTCATGTTTTGATTTATGTGCAATATCATATTTCCCCAAAAACATAAATACCAAAGATACATTTTGCATAAATAAATTGCTCCAGAAATGTTATAAAACAAGAAATAAAATCATTATCTATCTATTGATTAAAAGCCCTTGTCTTGTTACTTCATTGTAGCTTGCTGCATTCTCAAGAAGCCTCTTCCctttctgtctgtatgtctgtctgtccgtccgtccgtccgtccgtccgtccgtccgtctatTAACACAACAAGTTTATCTAAAATGTCTTTGAAAATGTATCTCTGACACAGTGTAGTTCAGGTTAACACAGCACTGATCCACAATGTTACCACATTGAACATAATTTGACTCCTACACTAAAACCTATAGGTCAACATTATTACAGGAAGAACAGTGCAAAGGGTATTTTGGTTGGAATGGAGGAAAATCTTTCAGAATTACCAAGGTTCCAAAATGAATTACCAAGGTTCCAAAATGAATTACCAAGGTTCCAAAATGAATTACCAAGGTTCCAAAATGAATTACCAAGGTTCCAAAATGAATCAGCCAGGTTCCAAAATGACAACCAATAGTAATCTTACAAAGATGTGATTGGTTTAAATCTATTTCAACTATTTATATATCACCAGAAGCTTCTGTCTGTTTCACATGAACACAGTTAtttaataaaaacacatttaggTCTGGATTCAATCCGGATCGCACAAGATCCGTGTTAAAATGAGAAGGTCATTTCCGATGAAGCCGACGTATGCATCTTTTACCCTGAATGCAAGTCTCTGCAAACGCGGGAACATCGTCTTTAAATTTCAAACAAGCTATAACGCGGATATTCGGCAATACTTTGGCAATGCGGATTGTATCCAACCCTTAGAGTTGAAAGTCTCAAGAGGTTGGTTTTGCTgtcatctcacacacacattgcacaACTCTAAACAGACAGATAATATATTCCAAGACAAGAGACTAAAGTGACTCAAAAAAATAAATCTGCACCTCTTATCTACATCACATTATTAAGCCCGATGGAtttgatcaacaacattgtgaTACTTTGACCAATTATATTGTTGTTTTAAAGCGGAAAAAGCTTTAATTCCCATAACTTCAAACTACAGTGTAGAATGAGTCAGGGCCTTGAGGTGCCACACGAGACTCTTCCACTACCATTAATTGTAATTTGTTCTAAAGTCAAACTCACACTTTACTACAGATGTAACCTTATCATCTGACTCAGGTAATGACAATTATAACTGACAATACTCAGGTAATGCCAATTATACCTGGCAATACTCAGATAATGACAATTATAACTGGCAATACTCAGATAATGACAATTAGAACTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405948 False 957 lncRNA 0.41 2 1041818 1043034
TU405954 False 2129 lncRNA 0.44 2 1042470 1177985
TU405947 True 3264 lncRNA 0.37 2 1043359 1046664

Neighbor

gene id symbol gene type direction distance location
LOC110523098 NA coding upstream 306027 733011 ~ 737553 (+)
LOC110524924 ptbp3 coding upstream 442539 482425 ~ 599279 (+)
LOC110523070 inip coding upstream 625284 410761 ~ 416534 (+)
LOC110524922 LOC106572882 coding upstream 729220 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 756685 224811 ~ 285133 (+)
LOC110523075 hook3 coding downstream 43678 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 49632 1227617 ~ 1228033 (+)
LOC118964548 NA coding downstream 50102 1228087 ~ 1232244 (+)
LOC118964547 NA coding downstream 68016 1246001 ~ 1249676 (+)
LOC118964550 NA coding downstream 74840 1252825 ~ 1255902 (+)
G357566 NA non-coding upstream 27847 1012774 ~ 1013971 (+)
G357587 NA non-coding upstream 32050 1009340 ~ 1009768 (+)
G357584 NA non-coding upstream 34346 1007164 ~ 1007472 (+)
G357571 NA non-coding upstream 63332 973277 ~ 978486 (+)
G357569 NA non-coding upstream 70666 970626 ~ 971152 (+)
G357973 NA non-coding downstream 4769 1182754 ~ 1183323 (+)
G357984 NA non-coding downstream 34430 1212415 ~ 1212672 (+)
G357986 NA non-coding downstream 36036 1214021 ~ 1214494 (+)
G357999 NA non-coding downstream 56703 1234688 ~ 1235117 (+)
G358003 NA non-coding downstream 86389 1264374 ~ 1264818 (+)
G357565 NA other upstream 101077 940235 ~ 940741 (+)
G357564 NA other upstream 101945 939068 ~ 939873 (+)
G357136 NA other upstream 840176 200717 ~ 201642 (+)
G358042 NA other downstream 210410 1388395 ~ 1390468 (+)
G358076 NA other downstream 296810 1474795 ~ 1475734 (+)
LOC110523096 NA other downstream 722378 1897358 ~ 1904914 (+)
G358596 NA other downstream 868689 2046674 ~ 2047025 (+)
G359084 NA other downstream 1438893 2616878 ~ 2617330 (+)

Expression


Co-expression Network