G358320


Basic Information

Item Value
gene id G358320
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1836397 ~ 1871533 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU406901
agagacagtagatctagctggtctgtcataacataatagagacagtagatatagctgcactgtcataatataatagacattagatctagctggtctgtcataatataatagatacatagagacagctggtctgtcataatataatagagacagatctacctggtctgacacaatataatagagacagaagatctagctggtctgtcataatgtaatagacagtggatctagctgttttgtcataatataatagagacagtagatatcgctggtctgacataatataatagaaacagtagatctagctggtctgtcataatataacagagacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcataatttaatagagacaaaatatctagctggtctgtcataatataacagagacagtagatatagctgcactgtcataatataatagacattagatcaagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacattagatctagctggtctgtcataatataatagagagatatatctagctgttttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgtcacaatataatagagacagaagatctagctggtctgacaaaatataatagagacatagagacagtagatctagctggtctgtcacaatataatagagacagaagatctagctggtctgtcataatataatagagactatagatctagctggtctgtcacaatataatagagacagaagatctagctggtctgtcataatgtaatagagacagtggctctagctggtatgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctgcactgtcataatataatagagacagtagatctagctggtctgtaataatataaaagatacagtgtgtatatatagctggtctgtcataatgtaatagagacagtggatctagctggcttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtggatctagctggcttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctacactgtcataatatattagacacattagatctagctggtctgtcataatataatagagaaagtagatctagctggcttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgcactgtcataatataatagagaccgtagatctagctgaaccttcataatataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagcgacggcagatctagctggtctgtcataatataatagagacagtagatctagctgcactgtcataatataatagagacattagatctagctggtctgtcataatatgatagagacagatctagctggtctgccataagtTAATAgagagtagatcgagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacagtagatctagctggtctgacataataaaat
>TU406902
atataatagagacagtatatctagctgttttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtatgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatatagctgggttGTCATTATATCAtttagacagtagaactagctggtctgtcataatataatagagatggtagataTAGCTGggtagtcataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtttgtcatattatattatagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU406901 False 2039 lncRNA 0.35 3 1836397 1842114
TU406902 True 925 lncRNA 0.34 2 1840732 1871533

Neighbor

gene id symbol gene type direction distance location
LOC110523072 LOC106572640 coding upstream 7454 1709543 ~ 1828943 (+)
LOC118964550 NA coding upstream 580495 1252825 ~ 1255902 (+)
LOC118964547 NA coding upstream 586721 1246001 ~ 1249676 (+)
LOC118964548 NA coding upstream 604153 1228087 ~ 1232244 (+)
LOC118964551 NA coding upstream 608364 1227617 ~ 1228033 (+)
LOC110523096 NA coding downstream 25825 1897358 ~ 1904914 (+)
LOC110523104 LOC106572580 coding downstream 594598 2466131 ~ 2494292 (+)
LOC118964552 cntfr coding downstream 784165 2655698 ~ 3017288 (+)
LOC110524930 LOC106572564 coding downstream 1161316 3032849 ~ 3107239 (+)
si:busm1-57f23.1 LOC106572555 coding downstream 1268509 3140042 ~ 3148590 (+)
G358295 NA non-coding upstream 127154 1708496 ~ 1709243 (+)
G358282 NA non-coding upstream 138095 1698084 ~ 1698302 (+)
G358230 NA non-coding upstream 237972 1560081 ~ 1598425 (+)
G358215 NA non-coding upstream 327605 1508112 ~ 1508792 (+)
G358074 NA non-coding upstream 367343 1468355 ~ 1469054 (+)
G358475 NA non-coding downstream 42675 1914208 ~ 1914413 (+)
G358477 NA non-coding downstream 43160 1914693 ~ 1915171 (+)
G358479 NA non-coding downstream 45845 1917378 ~ 1917647 (+)
G358498 NA non-coding downstream 64484 1936017 ~ 1936272 (+)
G358520 NA non-coding downstream 104903 1976436 ~ 1980579 (+)
G358076 NA other upstream 360663 1474795 ~ 1475734 (+)
G358042 NA other upstream 445929 1388395 ~ 1390468 (+)
G357565 NA other upstream 895656 940235 ~ 940741 (+)
G357564 NA other upstream 896524 939068 ~ 939873 (+)
LOC110523070 inip other upstream 1419868 410761 ~ 416534 (+)
G358596 NA other downstream 175141 2046674 ~ 2047025 (+)
G359084 NA other downstream 745345 2616878 ~ 2617330 (+)
G359294 NA other downstream 1129741 3001274 ~ 3002082 (+)

Expression


Co-expression Network