G358318


Basic Information

Item Value
gene id G358318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1837284 ~ 1875702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU406895
cattagatctagctggtctgtcataatataatagagacagtagatttagctggtcggCCATAAGttaatacagtagatctagctggtctgtcataatataatagcgacagcagatctagctggtctgtcataatataatagagacagtagatatagctgcactgtcataatattatagagacattagagctagctggtctgtcataatataatagagacagtatatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggcctgtcataatatattagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtatgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatatagctgggttGTCATTATATCAtttagacagtagaactagctggtctgtcataatataatagagacagtagatatagctgggtagtcataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtttgtcatattatattatagac
>TU406896
tatagctggtctgtcataatataatagagacagtagatctagatggtctgccaTAAGTTAAtagagtagatcgagctggtctgtcataatacaatagaaacagtagatctagctgctctgtcataatataaaagagacagtaaatcgagctggtctgtcatattataatagagacagaagatctagctgacctgtcataatataatagagacattagatctagctggtctgtcataatttaatagagacagtagatctagctggtctgtcataatataatagatacagtagatctagcagatCCGTCGTAATagaatagagaccgtagatctagctgcactgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatatagctgggttGTCATTATATCAtttagacagtagaactagctggtctgtcataatataatagagacagtagatatagctgggtagtcataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtttgtcatattatattatagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU406895 False 1128 lncRNA 0.35 3 1837284 1875702
TU406896 True 730 lncRNA 0.35 2 1854639 1875702

Neighbor

gene id symbol gene type direction distance location
LOC110523072 LOC106572640 coding upstream 8341 1709543 ~ 1828943 (+)
LOC118964550 NA coding upstream 581382 1252825 ~ 1255902 (+)
LOC118964547 NA coding upstream 587608 1246001 ~ 1249676 (+)
LOC118964548 NA coding upstream 605040 1228087 ~ 1232244 (+)
LOC118964551 NA coding upstream 609251 1227617 ~ 1228033 (+)
LOC110523096 NA coding downstream 21656 1897358 ~ 1904914 (+)
LOC110523104 LOC106572580 coding downstream 590429 2466131 ~ 2494292 (+)
LOC118964552 cntfr coding downstream 779996 2655698 ~ 3017288 (+)
LOC110524930 LOC106572564 coding downstream 1157147 3032849 ~ 3107239 (+)
si:busm1-57f23.1 LOC106572555 coding downstream 1264340 3140042 ~ 3148590 (+)
G358295 NA non-coding upstream 128041 1708496 ~ 1709243 (+)
G358282 NA non-coding upstream 138982 1698084 ~ 1698302 (+)
G358230 NA non-coding upstream 238859 1560081 ~ 1598425 (+)
G358215 NA non-coding upstream 328492 1508112 ~ 1508792 (+)
G358074 NA non-coding upstream 368230 1468355 ~ 1469054 (+)
G358475 NA non-coding downstream 38506 1914208 ~ 1914413 (+)
G358477 NA non-coding downstream 38991 1914693 ~ 1915171 (+)
G358479 NA non-coding downstream 41676 1917378 ~ 1917647 (+)
G358498 NA non-coding downstream 60315 1936017 ~ 1936272 (+)
G358520 NA non-coding downstream 100734 1976436 ~ 1980579 (+)
G358076 NA other upstream 361550 1474795 ~ 1475734 (+)
G358042 NA other upstream 446816 1388395 ~ 1390468 (+)
G357565 NA other upstream 896543 940235 ~ 940741 (+)
G357564 NA other upstream 897411 939068 ~ 939873 (+)
LOC110523070 inip other upstream 1420755 410761 ~ 416534 (+)
G358596 NA other downstream 170972 2046674 ~ 2047025 (+)
G359084 NA other downstream 741176 2616878 ~ 2617330 (+)
G359294 NA other downstream 1125572 3001274 ~ 3002082 (+)

Expression


Co-expression Network