G358317


Basic Information

Item Value
gene id G358317
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1860294 ~ 1893452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU406891
gtcatattataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctagtatgtcataatataatagagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtctgtcataatatcatagagacaatagatctagctggtttgtcataatataatagatatagtagatgatgctggtctgtcaaaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggactgacataatataataaagacagtagatctagctggtctgtcattatatgatagagacagaagatctagatggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacagaagatctagatggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtagatctagctggtctgtcattatataatagcgacagcagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcatattatattagagacagtagatctagctggtctgttataatataatagagacagtaaatcgagctggtctgtcatattttaatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacaaagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagcgacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtatatcgagctggtctgacataataaaatagagacatagagacagtagatctagctggtctgtaataatatgatagagacagtggatctagctggtctgtcataatatactagagacagtagatctagctggtctgtcataatataatagagacagtaaatcgagctggtctttcatattttaatagagacagtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacggtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatgcatagagacagcagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagcgacaacagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagaaacagtagatctagctattctgtcataatgtaatagagtgGGTGGAaatagctggtctatcataatataacaTAGACAAAgcgaaagtagatctagctggtctgtcataatataaaagagacagtagatctagcttgtctgtcataatacaatagagacagtatatcgatctggtctgtcataatgagctagatctactctctcaattatactacgaaagaccagctagatttactgtctcatattatgacagaccagctagatctattgtctcaactctattatgacagaccatctagatctattatctctattaaattatgacagaccagctacatctactgtatttattatattatgacagaccagctagatctaccttctctattatactacgaaagaccagctagatttactgtctctagtatattatgacagactagctagatctactgtctctattatattatgacagaccaacaagatctactgcctcaattatattatgacagaccatctagatctaccaCCTCAATTGTAttttggcagaccagctagatctattgtcccAATATATTGCTAAAGACCagatagatttactgtctctactatattatgacagagcagctagatctactgactccattataatatgacagaccatctagatctactgtgtcaatATTTCATGACGGAcctgctacatctactgtctgaattatattatgacagaccagctagaactactgtctctattatattatgacagaccagctagatctattgtctctattatattatgacagaccagctagatctactgtctcaattatatcatgacagacaatctagatctactgtctcttctttattatgaaagaccagctacatctacagtctctaatatattatgacagaccagctatatttactgtctcaatcatattatggcagaccagctagtctactgtctctactacattaacctccacatcaccagaggaacagaggagaagtaggataggggtacggctaaagactacacgaactggccgtctagcatgttcagaacagagagtaaaaggagcaggtatCTGGGCacaatagcatagattcaaggcatagtgcacagacaaaggtaaggtaggaagTGAgcacattggaggtaaacctaggcattgagtaatgaagagagagatatagtctctagagatatTTAAAcaaggtgatgtcatcgcatatgtaggaggtggaacaacatggttggttaaggcactttgagcagggctagaggatctacagtgaaataagacggtaatcactaaccaggacagtaatggaagaggcatattgatattagagagaggcatgcatagccaagtgaacatatgggtccagtgagtggatgggctggctggggacacggcgattcagacagttagcaggccgatgctaacagttagtaggccgggagTAAAGCAAGCTagtagctagcagttagcaggcctggttagcaagcaagcagttagcatggGCTAGCATGGGCTAGCAGTACAGACCGGGCAggtaagctagcagttagcaggccaggGCCGgcagctagcagttagtagaccggggcaagctAGCAGATAGCAGGCCGGGatagcaagcagttagcagaccgggttagcaagcaagcagttagcaatggctagcagttagcagaccggggaggcaagttagcagaccgggttagcaagcaagcagatagcaggggctagaaagttagcctttgggggacgtcgcgatgggggtaag
>TU406893
ctgtcataatataatagagacaatagatctagctgccctgtcataatataatagatgcatagagacagtagatctagctggtttgtcataatataatatacagagCAGATCTAGAtgttctgtcattatataatagagacagtagatctagctggtctgccataatataatagagacagtaaatcgagctggtctgtcatattataattgagacagtagatatagctgggttGTCATTATATCAtttagacagtagaactagctggtctgtcataatataatagagacagtagatatagctggctagtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacacaatataatagagacatagagacagtagatctagctggtctgtcataatataatagagacattatatttagctggtctgtcataatataatagatgcatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacacaatataatagagacatagagacaatagatctagctggtctgtcataatatactaaagacagtagatctagctgccctgtcataatataatagatgcatagagacagtagatctagctggtttgtcataatattatagacaGAGCAGATCTAGAtgttctgtcattatataatagagacagtagatctagctggtctgccataatataatagagacagtagatctagctgccctgtcataatataatagatgcatagagacagtagatctagctggtttgtcataatataatagacagagcAGATCTAGAtgttctgtcattatataatagagacagtagatctagctggtctgccataatataatagagacagtagatctagctgccctgtcataatataatagatgcatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttataatataatagagacaatagatctagctggtctgccataatttaagagacagtagatctagctggtctgtcataatagaatagagacagtagatctagctgatctgtcataatagaatataaaccgtagatctagctgcactttcataatataatagagtcagcagatctagctggtctgtcataatataatagacagtatatatagctggtctgtcataatgtaatagacagtggatctagctgttttgtcatattataatagatgcatagagacagtagatctagctggtttgtcataatataatagacagagcAGATCTAGAtgttctgtcattatataatagagacagtagatctagctggtctgccataatataatagagacagtaaatcgagctggtctgtcatcatataatcgagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatataatagagacagatctagttggtctgtaataatacaatagagccatagatctagctgctctgtcataatataatagacaccgtagatctagctggtttgtcataatataatagagacagtagatctagctggtctgtcataatataatcagtAGAtttcgctggtctgtcataatataatagagacagtagatgtagctagtctgtcataatgt
>TU406892
aatataatagacagagcAGATCTAGAtgttctgtcattatataatagagacagtagatctagctggtctgccataatataatagagacagtaaatcgagctggtctgtcatattataattgagacagtagatatagctgggttGTCATTATATCAtttagacagtagaactagctggtctgtcataatataatagagacagtagatatagctgggtagtcataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagttggtctgtaataatacaatagagccatagatctagctgctctgtcataatataatagacaccgtagatctagctggtttgtcataacagagacagtagatctagctggtgtgtcataatataatagagacagtagatctagctgctctgtcataatataatatagtcagTAGAtttcgctggtctgtcataatataatagagacagtagatatagctagtctgtcataatgtaatagattgGGTGGATAtagcctgtctgtcataatatattatagacagtagatctagctcctctgtcataatataatagagacagtagatctagcctgtctgtcataatatattatagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagcgacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattatattagagacagtagatctagctggtctgtcataatataatagagacagaccagctcgatttactgtcatattttaatagagacagtatatctagctggtctgacataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctggtctgtcataatataatagagacagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacttagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagcgacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtatatcgagctggtctgacataatataatagagacatagagacagtggatctagctggtctgtcataatataatagacattatatttagctggtctgtcttaatatgacagagacaatagatctagctggtctgtcataatatactagagacagtagatctagcaggtctgtcataatataatagagacagtaaatcgagctggtctttcatattttaatagagacagtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacggtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacattagatctagctggtctgtcatactataatagagacagtacatctagttccactctcataatataatagacagtagatctagctggtctgtcataatataatagagacattagttctagctggtctgttataatataatagagacaatagatctagctggtctgccataatttaagagacagtagatctagctggtctgtcataatagaatagagacagtagatctagctgatctgtcataatagaatataaaccgtagatctagctgcactttcataatataatagagtcagcagatctagctggtctgtcataatataatagacagtatatatagctggtctgtcataatgtaatagacagtggatctagctgttttgtcatattataatagatgcatagagacagtagatctagctggtttgtcataatataatagacagagcAGATCTAGAtgttctgtcattatataatagagacagtagatctagctggtctgccataatataatagagacagtaaatcgagctggtctgtcatcatataatcgagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagatggtctgtcataatacaatagagccatagatctagctgctctgtcataatatgatagagaccgtagatctagctggtttgtcacaatatactagagacagtagaactagctggtctgtcatattataacagagacagtagatctagctggtctgtcatattataacagagacagtagatctagctcgtgtgtcataatataatagagacagtagatctagctgctctgtcataatataatatagtcagTAGAtttcgctggtctgtcataatataatagagacagtagatgtagctagtctgtcataatgtaatagattgggtggatatagctggtctgtcataatatattatagacagtagatctagctcctctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatcgagctggtctgtcatcatataatcgagacagtagatctagctggtctgtcataatataatagagacgtagagacagtagatctagctggtctgtcataatataatagacagtagatctagctagtctgtcataatataatagagacagtagagctagctggtctgtcataatacaatatagacagtagatctagcactctgtcatgatataatagagacatagagacagtatgtgtagctggtctgccataatacaatagagacagtagatctagctggtctgtcataatatattagagacatagagacagtagatctagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU406891 False 3722 lncRNA 0.39 4 1860294 1893452
TU406893 False 2001 lncRNA 0.35 2 1872497 1881584
TU406892 True 3667 lncRNA 0.35 3 1877864 1886874

Neighbor

gene id symbol gene type direction distance location
LOC110523072 LOC106572640 coding upstream 31351 1709543 ~ 1828943 (+)
LOC118964550 NA coding upstream 604392 1252825 ~ 1255902 (+)
LOC118964547 NA coding upstream 610618 1246001 ~ 1249676 (+)
LOC118964548 NA coding upstream 628050 1228087 ~ 1232244 (+)
LOC118964551 NA coding upstream 632261 1227617 ~ 1228033 (+)
LOC110523096 NA coding downstream 3906 1897358 ~ 1904914 (+)
LOC110523104 LOC106572580 coding downstream 572679 2466131 ~ 2494292 (+)
LOC118964552 cntfr coding downstream 762246 2655698 ~ 3017288 (+)
LOC110524930 LOC106572564 coding downstream 1139397 3032849 ~ 3107239 (+)
si:busm1-57f23.1 LOC106572555 coding downstream 1246590 3140042 ~ 3148590 (+)
G358319 NA non-coding upstream 19665 1834395 ~ 1840629 (+)
G358295 NA non-coding upstream 151051 1708496 ~ 1709243 (+)
G358282 NA non-coding upstream 161992 1698084 ~ 1698302 (+)
G358230 NA non-coding upstream 261869 1560081 ~ 1598425 (+)
G358215 NA non-coding upstream 351502 1508112 ~ 1508792 (+)
G358475 NA non-coding downstream 20756 1914208 ~ 1914413 (+)
G358477 NA non-coding downstream 21241 1914693 ~ 1915171 (+)
G358479 NA non-coding downstream 23926 1917378 ~ 1917647 (+)
G358498 NA non-coding downstream 42565 1936017 ~ 1936272 (+)
G358520 NA non-coding downstream 82984 1976436 ~ 1980579 (+)
G358076 NA other upstream 384560 1474795 ~ 1475734 (+)
G358042 NA other upstream 469826 1388395 ~ 1390468 (+)
G357565 NA other upstream 919553 940235 ~ 940741 (+)
G357564 NA other upstream 920421 939068 ~ 939873 (+)
LOC110523070 inip other upstream 1443765 410761 ~ 416534 (+)
G358596 NA other downstream 153222 2046674 ~ 2047025 (+)
G359084 NA other downstream 723426 2616878 ~ 2617330 (+)
G359294 NA other downstream 1107822 3001274 ~ 3002082 (+)

Expression


Co-expression Network