XLOC_023048


Basic Information

Item Value
gene id XLOC_023048
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 33533520 ~ 33543912 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047047
GTTAGTTCTCACAGATTTGAGGACCCTCAGTCAAGGTGAGTGCGCTAAATTAACTGCAAAGGGAAATAAAATCATTACTTACTCTAAATATGTGTTCTTGTTAAGTTAAAAGGTAATCTTGGGCGCTTTATGCAGGGAGGAGAGGGATATTTTCTTTCCCAAAATAAAAGAAGCATCTACCAATGATGACATAAAGACAGCCTGCTGATGATTGACAgacagatatttatttatttatttatttattattttatttatggtaGGATTTaaggatttatttactcatttatttttatttttatatttacatatttatacttttatttatttattgttttgcaggtttcgtcctccatagAAATAgacagggtaaaaaaaaaaaaaaagtttgttcttagtttttttttaaaatcaccaTACTTCCCCAGTATtacactttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaataaattaatatttatttatttatttatttaaatttcatttaagcatttaaataaatCCATTCATTGTATTTGGTCATATAAAATCCATTCAGCCATTACTGTgcagtttaaattaattttgcagaaGAGTGTACCTCAGTCATTCCAACTCATCTCCTTCTTTAACACACAAGGTTCTACTGAAAATAGCTTGGGAGTTCAACAAAGCATTTAATTGCAAATGTACTGCAAAACTTACCAAGAAGAGTTAAAATGCAAGTAAACTGATGTTAGGTAAATATTTTCAGAGCTGTGTTCATccaaaatgcttttaaatgtttgtatGCTTTCgagtttgttacattttttttgatgTTTTGCTCATGTTGAGCATCAATCAAATGCAACAAAATGGAGTGGACATGTCATGTTTGATTGCAGTAAGGAAGGATGGGAGGGGGTAATCAAGAACGCTACAGTGAAGTTATTGTTGTGACTCAAAAAcacattcatttctgttttgGAAATGACTGACAGAGCAGCAGTCACAACATGAAGATTGCAATGCTAAAacaaggtaggtaggtaggtcaGTCAGTAGATTAcagattgatagatagacagatagatagatagacagacagatagacagacagatagatagatagatagatagatagacagacagacagacagacagacagacagacagccaggAACTTTGGATTACCAGAGTTATGGATTAGGGCAGGGGTcctcaatcttggtcctggagggccggtgtccagcaaaaTTTAGTTTCAACCACAAGCAGaagcacctgggctagctaatcaagctcttattaggctTTCTGGACAAacccatgcaggtgtgttgaggcaagttagagctaaaatctgcaagacaccaggggcctcatgtatcaacgctgcgtacgcacaaaaactttgcgtacgccacgtttcacgctcagaatcgctcacgtttggatttactaacaatgaactgaacgtgggaatgtgcgcagctttacggcagctttctggcaggcgtacgcacattttttgtgcgtgtgtgtttttttccattggcgactcctagaggcagttgtgttaaattcctctctacaaagtgtctgagccttgcaaaggcagctgtatgagacgggttcatctagtaggtatgtaagatttccataccatacagttgaccagctaaacattaaagcacaatttgcagcggtcgcctgttttcccaatgtaatctgagcgctCTACCGCACGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCCTACCAGTTCATCCGAACCATCAGTTTGATTACTAACAGGCTGTCTGGCAGAATGTAAAAGTAGCCAGTGATGGACTGTTTTCATGAGTTGAATTTTTTCTAAAAAGTTTAGTCACaggtacattaaaaaaaacatgtaatgtaCCAGAATGGCTGTTTTTCATCTGTAGTCGCTAGACATAATGTTAAGATCACCccaaacaaaatgtaattaaCATACATATTAAAACAACTTTAAATTACATAGAGATATACCCCCGAGCTATCTCTTACAGTTGTTAGTGTAATATACTATTCTCATGCGGCTTTtatggaaaatgaaaacattacaatttgactgtttttacacattttattgcaaacaattttttttttgtcacgttgACACATTTACCATAGGATTTAAAGTGCATTTGCAACACGTGTGGAACTATTATATGTTAAATAACAATATCATCTGCATAAATagatattattaaatttatatattatatattattaaatgtatatatatatatatatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattttttataagttttatattTGAAGGTACAAAGTAGTCATTAATTAAACTTACAGGACCACAAACATTTGAACTTTGGATGAAGTCATCTTCAAAAtgattgagaggggtctggatgcagacctggtgcagtgcaatctgagctgcatcctatgctttttaatgcactcacctaaccccacccctaacccgacccgtcacagtgatgtcactcactccattgagtgctttctcgagtgatgcaatctcagcttgcatcataaaggctgcatccatatAACATTGAAatgattgttttcttttttgacatttgagtgtaaagtttTTACATAGGGAATTTGGAGAAGTTTTATCTCTTCATAATTCAAATAATACTGTGaacagccagaaaaaaaaaacattcacaatatttgtagaataaaatatactgctaaaaaaaaataaagggaacgcTTGGACTTACATTGTGTTTTTTAAGTGTTtcctttattattttgtttttttagcagtatacagtgctcagtatgattgagtacaccctattttgaaaatgaataatttttatccatttctcagtgaatataggcaatgtttttggtgcatttaaacaaaacagatttattaaattgatatatttaataaaataatagtttagattgaaagttaataaaacaattacaacctacaaaattacaagtaaatgtttcattaattaattaatttttttgcttctcttaatttttccctctttttaacatttgtttttaatatttttctgtaacatataTTTGGgtatactagtttttggaccattatcgtaagttattttgtttgataagctgcagatttggcttcagtactgactaatttaatatatatgcacaaatatgatattgtatagcttcctattaaaatatgaatttaaaagaaagatATGTGTGAGATGTACTTATATTCTTAGCACTGTAGATTTGGTGTAAGCACTGATGAAGTGGAGATTAGAGACTTAAATAAACTGgcataaacattatataaatagATTTATAATAACACATCTTTTTGACAGAACTGTCTTTAAAATTTGTGTTATAACTGAAATATACAGACACGAAAGCTTTTTTTCTTCTCATTTTTCAAATAGGGCTGACGATTCCAAATTGACATGTGCATGAAAAAACCTGCTGAGCCTCACCTTAAAAAATTGCATCTAAGTAAAATATCCAGTTTAACTAGACTTAAATACATTATGTTAACTATTAATGTGCCATTAAAGGATACCATTCTGATATTGTATACGACAAGcatcaccaatctcggtcctggagggccggtgtccctgcagggtttagctccaacctgcttcAATAtatctgcctggatgttttaagtatgcatagtaagaccttgattagctgctcagatgtgtttgattacggCTGGACCTaagatctgcaggacaccggccctccaggaacaagtttggtgagccCTGGTATACGGTCTCTGCAGTGTAAAACCTGGGTGTCTGTAAATGTTGAAAAATGTCTTATTTGAACATCCTAGACATTCccaaaaatgacagaaaacaaaGAGTCTcctcctatggaagtcaacggcGCATAAGGGGAAGCTGATCCTAAGTCAGAAGTATGACATATCCATGGAAGAGAAACAAAACTCTCAATTTGAGGAGGAAAACACTGGGTCACCTCATGAAAAAGAGAAAGATGATATAATGAACCCACTCCTATCCTTACATGTGGACCTAGAAGTAAAACCACCACTAACCACTATAAAAACTGGTATgatgagagtgtttgtgtgtgagattaACAGATTGACCTTTTACAACCACATGTGGTTTTAATGTACTGATAAGTAGGATTTTTCCATTGTATGTCTTTCTAAATGTACTGTAGGTGTGATTAAACACAGAAGACTCAGATTCACAATCCAGTCCAAACTGCTGTGAGTAAACGAtttaatattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtttgtgtgtgtttgtgtgtctgtgtgtgtgtgtctgtgtctgtgtttatgtgtaagagagagagagaccctgGACTACAAAATCATAAGTcatcagttcagtttttttttaagttgtctaAATTAAGCTGTTAGCAATGCATATTAGTCTAAGGCTACTAATCAAAATGTGAGTTTGTATATATTTCCAGGACATTcactacattttttttcatcaaacATGATTAATGATGTGTGGCATTAAAgcaaaatcaataattttgacctgtACTTTTGCCAAAACATATacaattgaaatcagaattattagcccccctgaagtTTTAgcctgcttgtttatttttcccccaatttctatttaacggagagaagatttttttcaacacatttctaagtataatagttttaataactcatctctataaactgattttttttatctatgacattatgacagtaaataatattttactagatatttttcaagacacttctatacagcttaaaatgcatttaaatgattaactaggttaattaggttaactaggcatgttagagtaattaggcaagttactgaatatcgatggtttgttctgtactgTCAAAAAAAtgacttaaaggggctaataattttaaccttaaaatagttcataaaaaattaaaaacctcttttattccagccaaaataggacaaatgaaactttatacagaagaaagaaaattatcagatatactgtgaaaatttccttgctctgctaaacatcattttggaaatataaaaaaaaaagaaataaaatcaaaggggtgctaataattctgacttcaactgtatccaCGCAACATACTGCAAGACCagggtcatttgtttatttattattatttcttttaaacaatttgaaatgtaatactacacacaaaatgacaaaaaaaacttattaataaatatttgatttgTTAAGTCAGTTTTACTGAACATGCTTTGTTATGTGGATGTCAGTTCATGTTGCACATGTCTGTAGTTTTGCTATAAACAAttttgactctctctctctctctctctctctctctctctctctctctcttggatATCAGGGAAACGCTCTGTGATACTGTCAAATGAAGCCCAGAAGGAGAAAGTTTAACTGGTCAGAGCTTTCAAAGATGAGCGCAGAGCAGCTCTTGATTCCCGACACAAATACCTCATCTCTGTCATTGCAGAGGCGATCAGCCTGGCAGACATGGAAGTCGAGGGAGCTATGATCGCGGATGATAAGGTGTGTAAAATATGATACTGTTGACTAGGGGTGCACATCATATCAccaaaaaaattgcattattacaataataatatatgaaatatactgtacatattgcAGTTGTGTGAAGTgaagttttattaactaattttcgAGAGATGATTAATCGTGGCTGGCGTAATCAACGATAAtgcaatcagattgatccaagcctacaataaataaACCGATTCCTATACTGCTTTCGTTTTGGAAAAATCCCTcctccaccccatctcctcctttttctcctttTCCAGGGGGAGCttttgagacctacctgatctcggacccccttATATGCTAATTGACCagacgggagccctgggctcaattatctccaagctcagggttctctcccaggacagcatgccaaacctgcaaataaagtcaagcaatatctaaatgtgaactcttgacatgacatttattttatgtgttgTTTGTTGATAtgaatttgaccaatcagatggggcctaTATCcccagtagttgctgttctgctattgccTGTAGCAACCCAAAGGTGACTCTAGAGCTGAAAATACATACTAATGGCGGTAATTAAGAGGAGAGAGGAAAAATACAACGCCAATAAGAGTCactcattttttattcatttataacattttaaagggctctattttgacggtccatgcgcaaaacgcagggcgcaaacactttcaaggcgtgtcagaatgcatttttgctaatataaggacggaaaaatccgctttgcgccgtggcgcaaggTCTAAAatggttgagcttattttcttaatgagttaaaggtgtgttttgagaataaaccaatcagagtctcatcccccaactgagcatttcactagtaagaaaacagttaaacagagcatctgcagtgagagaatgagagataaatgatctactttgctctcgtggatagagaaacctttacgcacagacatcaataagcctaaaaataattaatttagtttgttaagcgcaaatatttgtttcaaaactatttcttaattctAAAAATATCTAACCAGTTTAgttttatataactttttttaaatagcattttttcTCATCAAATATTATAATGTTAGAAATATCGTTATCGCAATACTTCACAACAATATTGCATACTTTGTGCATCCCTACTGTTGGCATTCTCAATACCACAAAAACATTCACTGTGTGCCTATAAATGTGTGAACTTTTATTCTGCAGTTCTACATAATGGAGGAATTCTTCTCAGCCAATTGCTCAAAAAGTCTCATGTTGTTCTACCAAGCTACTGAATCGATTAAACATACTACTTGAATGCCTAATATCCTAAAAGCGTTTGCCTGCCCTAACACAAACAAGTCAATTTCTGCCTGTATTTCACTGTAGTCCAATTCTGGGAACGACACCTCGAATGTAGCCAAAGGACAGAAGAAGCTGTTTATTACATCAGGCGATCATGAGGTACAGTAACAACTCTTGTACACTGTaggacaattatttatttaattcatattttttttttttaatttctacagcgcttttacaatgtaaattgtgtcaaagcagcttaacatagaagttctagtaaatgtaaactgtgtcagtccagttttcagagttgaagttcagtttagtttagttcaatgtggtttaaatttcactgctgaaagtccaaacactgaagagcaaatccattgatgcgcagctccacaactCCCAAACTGAGCATGCCAGTGGCGAGGAGAATTATTCACAATTACACAATTAACACACTGCTGCTTTCAATCAATCAAATTGCATTGTGCCGTTATTCGTTATTATCATTGGCATTTCAGGGGCAAAGGTGAGCTCGGCTATTACAGGTACTCCTCTAATTAAAACCTAACACTACCATTAAAATGAGGTCAGCGAACTGTCTATAAATCCTTTAAAGAATCCTGAGAAAAACACGTATTTCCAAAAAAAACCTAAACTAAAATTGATTTAACTGGAGcactaaattgttttattaatgattTCCGAAGAATCATGTGACATTGAAGCCTGAAATGATGAGGAAACAGGTTGTTCCAGTCATACAATTAATGCATTTTAAGTAGCTTCGGATGGACAGCATGTTCTAAATGGCGAGTGACTAAGTACTAGATACGTATGCCTGTTGCTTGGGAGAAAAACAATGAACGGCATTACTCTTTACTGATTGCAGGCTCTTACCGgacagtgtttgtttttcttgaaAAATCACAGACAAGGCCATAACCACTACAAACATATCCCaggtcagtgtgtgtgcgtgtgtgtgtgtgtttatgactgTGACTGGCCATGTTGGTACCATCTATAAGTATTTGATTGTCTTATGTCTTTCTCTGCAGGAGGTGAATTTTGGAATGCTTGACTGCTCAGAGTATCCTGCACAATCTGGAGTTTCTTTTTACTCAAGTCATGAACCAAGCCCTCAAGTCTCAGGAGGTATATTATATGATTCAGTGAATTTCAAAAATTATGCTTGGGAAATCATTAAAGGCTCCATTTACTACTGCTATTAAGATGAGTTTCTGTCAATCCAGTTACTGATGTAAGAGACGTTAAATGCAGGTGTAAACTGGCTCTTAATGGTTCATTCATCGACATGGGGCTCTTCATTCAATAGTACTCGTAAATCACACTGAGTGCTTTTGCAGAAGTGATGTGGAGCATGATGGAATCTAAACACAAGTGGTCATGAGATGCATTTCAATGCATGTTAATCACTTGTGATCAGATTACTGTAAACACGTCTTGGTACTAGATTGGTataacatatacactcaccggccactttattaggcacacctgtcccactgctatgtgttggcttgcactgagtcacagtttttaaagttcaatttcaaacggtttattttattttgaagatctgaggtgaactatctgctgctgctgctttcagtattatGGTAatgaatgtcatgtaaaatggcattcaaactcacattattagtattttacactgaataaagcacatgaggtgtacctgtttctaaaatataaatttcaggtatTGGTTAGGATAAAAGCTCatgttaatatggaaaatattccttctattgcatGTGGTTGCTTTCATATAGAAGACGATTTAAATTAGCCTTTAGACTCGATAGTCAGGTCAGCTGCTTTTGGTCCTCAATCATTTGTCGTTGTCTTTGATCCTGGAATGCAATACcgagttcaaccactgggtgtcaaaccaACACCCTGCACATTTAAATTCTCTCCTCTTTTACTCACCATTCACTCAAAACCTAttcaagtttctttcttctgctaagcataaaagaaaaatatctGGTTGCTGGTACCAGCTAACATCCAAAGTATTTTATTTTCCTGCTATGGCAGTCGATGGGTCCCAGCAGCTAGTAGTTTTCTAATTATCGCTTTAGtattgaacagaagaaagaaactcataatgagGGAAAATACATGATGagatcattttaatttttgggtgaactgcctcTTTACACAGTATTAAACTTTAACCTTtaaacattgatttattttacttCCAACTTTTGCCTTGTTTTCTATCTTCCTCTTAAGGTACAAATGAAGATCCGGTTACTGTTAGATCTTGAATGGCAGAAGCAGTCCCGTTTCTACTTCATAGATGACACAGACAGATGCATAATCCAAATCACAGATGTGGAGTTTGATTACTGTAATGAGCATCTGGGCTGCACTGATCATCTTGTGATTACTTCCCTTACTGACAGGCCAGTATAGATACATTCAAGACGCCAGGATCATTATAAATACTGGGTGTGTTCACATTTGTTGGGTTTGGTTTGATTAAATCAATTGCTCTATTTAGCTCATTTCATTTGAATGAGTGTGAACATTGCCAAAGGGTGCACGGAGCATGCGTACCAAGGCAGATTGAACTTTTTTGTAGagtttttttctgaaattatttgCTATTTAATATCAAGCATCTTTCAGCATTTCAAAGAGTTAGATTTAGCATgttctatctttcttttttttctccaggtTATTCTCATACTGCCTGTAACATTgcctatacatactgtatataatatttaggtctggactctgttGAGGCCATTCCATTACTCTCTTTGTTTCATCAACTGATTTTCTCTCCAAATTATATTagattttacataatttttgcaAATTGCTCTACATTTTTCTGTCCATTACATTAGCAGTTTGTTTGGgatcattatcatgctgaaaaataaaactcATATTCATATTAGGGGCTTTCTAGTAGGATGTACATGACGAAGTAAAACCTGCCTGTGCTTTTTATGGAGTCAATCtggggccatatatacttgcaacatgaaagttttgcaaacaaaaaataaaatattgagcaaaaaaatt

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047047 True 10393 lncRNA 0.34 1 33533520 33543912
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_023047 rmc1 coding upstream 52868 33462800 ~ 33480652 (+)
XLOC_023046 si:ch73-173p19.1 coding upstream 104563 33392698 ~ 33428957 (+)
XLOC_023045 NA coding upstream 231601 33297496 ~ 33301919 (+)
XLOC_023044 NA coding upstream 239968 33291473 ~ 33293552 (+)
XLOC_023043 NA coding upstream 677360 32855587 ~ 32856160 (+)
XLOC_023049 dnah5l coding downstream 45755 33589667 ~ 33697002 (+)
XLOC_023050 CU019563.1 coding downstream 225375 33769287 ~ 33769403 (+)
XLOC_023051 atg9b coding downstream 258616 33802528 ~ 33839355 (+)
XLOC_023052 NA coding downstream 298451 33842363 ~ 33849433 (+)
XLOC_023053 H2BE1 coding downstream 525763 34069675 ~ 34072088 (+)
XLOC_023042 NA non-coding upstream 858044 32567314 ~ 32675476 (+)
XLOC_023039 NA non-coding upstream 1279988 32209762 ~ 32253532 (+)
XLOC_023056 NA non-coding downstream 587832 34131744 ~ 34139367 (+)
XLOC_023057 NA non-coding downstream 826992 34370904 ~ 34376549 (+)
XLOC_023060 NA non-coding downstream 1329639 34873551 ~ 34874670 (+)

Expression

Expression of XLOC_023048 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
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Expression of XLOC_023048 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.

Co-expression Network