XLOC_023058 (lrrtm2)


Basic Information

Item Value
gene id XLOC_023058
gene name lrrtm2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 34606966 ~ 34612832 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045766
CTGTAGCAGTGAGTGGCTGCAACAAAAGCACAGAATAACATCTCAGCTCCTCTCCTCTGCTTTTCCCCCTCACTGCATCTCCTTTCCTCGGTGCCGAGAACTCAACACAGCACAGCAGAGACACACGAAACTGCCGTCGCAAGCGCAGCCTCTGCCTGCCATCAACAAGTTAGGGATGAAGGACCTCGGAGCGGTGAAAGAGGAATGTGTGATCTTCAATTAACCAATTGAGCTGACATCATTGCGGTGGAAAGGGAAAGAGGCAGCTAAGGGACGGACAGATCTGCTCAGCAGTGCTCCTTTGGATGCAAATCCTCAACTTCAGATTTAAGGATTCTTGGAAGGCAAATAATGTTCGTCTTTTCTTAATCTGGGAATTGAAAAGGACTGGAAAAAGGGACAGACGCAAATAACAGGGAGGAAAAagagagaggagaaaaaaaaacagcatcccAGGACATGGAATTCCTGAATTCGATTCAACTGGGGGGGCTCAGCACTTTATTTCTGAAGAGCCTGATTCCTTTTGTATTTACCCAAAAGGCTTTTTTCCCTTTGGATTTCTCTTCCATCTGGCTGCTCCAAAAGTCTGCGGAAAAAGACAGTTGAATGCAGCCTCCGATGTGCACAAAAGAATGGGTTTCCATTCAAGGTGGCCATTGGTGGGACAAGCACCAGCGGCACTTTGTGTGATCAGCATGCTACTGTGCCTCCCTCCTGTGTCATGCACAACCTGCCCCCAGAAATGCCGATGTGAAGACCTGCAGTTTTACTGCGACACACAGGGGCTCCTGGCGCCCCCAGACGGTGTGGATAAAGGGGCCCTTGGACTTTCACTCAGACACAACAGCATCAGCGAGCTCAGCTCAGACCAGTTCTTCGGCTTCACCCAGCTCACTTGGCTTCACCTGGACCACAACCAAATAACCACAGTGCATGAGGATGCCTTCCAGGGGCTGTACAAGCTCAAGGACCTTAACCTGAGCTCAAACCGCATCACCAAGCTGCCAAACACAACCTTCATCCACCTCATCAACCTGCAGATCCTGGATCTCTCCTTCAACCAGATGACTGCTCTGGAGCCTGAGCTCTTTCACGGGCTTCGGAAACTCCAGATCCTTCACCTGCGATCAAACTCCCTGCGCACAACACCCGTGCGGGCCTTCTGGGACTGCCGGAGCTTGGAATACCTTGGCCTGAGCAACAACCGGCTCCGTAGCCTGGCCCGGAATGGCTTCGCCGGGTTAATTAAGCTGCGGGAGCTCCATTTGGAACACAATCACTTGACCAAGATTAACTTGGCTCACTTCCCTCGTCTGGTCGCCCTCCAGTTCCTTTATCTACAGTGGAACAAGATCAACAACTTAACATCTACCATGGAGTGGAAATGGACAACTCTGGAGAAATTGGATCTCACTGGGAACGAGATTCGTGTACTTATCCCCGAGGTGTTCGAGACTTTGCCCAGCCTCAAGATCCTGCTGCTGGATAACAACAAACTGAGCAACCTCGACAGCCAAACCATGGATATGTGGAAGTCCCTAAATGTGATCGGGCTGTCAAGCAACCTTTGGGAATGTACCAAACGGATCTGCAATTTGGCCACTTGGCTGAGCACCTTTAAGGGTAGATGGGAGCATTCTATCCTCTGCTACAGTCCTGAGTATGCACAGGGTGAGGAAATACTGGATGCCGTTTACGGATTCCAACTTTGCCAAAATTTCTCGGCCCCGGTCGTACTGACCAGTACCAGCACGGAGGCCATGCTCCCTGACATCACGAGCTCCCTGTTCGGAAATATGCAGACCCCTACGCAAGACTTCTATGCAGAGGATTTTGGGAGCTTTACGATTGTCACTACTACCACCACTACCACACAACCCCCACGCACTGCCCTCGCTACTACTATGACGGTGGAGGGGGCAGATGTTACAGAGGACTACTCTGCGATGGACAACACATTGCTGACCCAGAGGGTCATCATTGGTACCATGGCTCTGTTGTTTTCCTTCTTTCTCATCATTTTTGTAGTGTACATATCACGCAAATGCTGCCCTCCAACTCTGAGGCGGATCCGCCATTGCTCGGCCATTCAGAACCGGCGACAGATGAGGACCCAGCAGAGGCAGCCAATGGCGGACCTGGCTACACAGGTGCCCTATAATGAGTACGAGACCAGTCATGAGGAGGGTGCACTTGTGATCATCAATGGCTATGGGCAGTGCAAATGTCAGCAACTGCCTTACAAAGAGTGTGAAGTATAAACTCTATTTATTCCTGCAGCTTATGGGTTTAACCATTTGTCCATTTCAAAAGATACAGGGTTTGCTTTTGgacttttctttcattttcagtTTGTATGAAGAAGAATATTCCTTTGAAATTGTTAGCTTTGAAATTCTATGAAAGTTTGAGATGACTGGGATGAATTTGAAGAGAAGAAATATAAAGAAATCCACaagtttatttttgtaatacaAATGCAAAGGTTCATATCGAGCTGGGGCAATCAATCTCAGCAGAGGAAGGTTGGATGTGTCACTGCATCGCCAGTTTGTGTACTATGTATTCTGCAGCACAGAGGAGATGAGAAATCTATAGCCAAACCGCCTGGAACCCTGTGCTCCAGAAAACAGTTTATAAAATGTCATATCTTCTGATAAATGGTGAAAATTTATttcatgggaaaaaaaaaatagtgttacATATGCTGAGCAGTGCAAATttaaaaggataaaaaaaaagacatttggtGCACGTTAGCAACACTATAGATCTCACTCATACATTCGCTTTTGGGGAGAGGAAAAAAAAGCAGATGTATACAAAAGCATCGACTCACCTTTTCTAAATTGAGAACGAGTACTGTTACAAATTAAGCCACATAATGCAATTTAGATTCGAACAGGGAATTCAACCCACTCGCATTACTCGGCTTCCTCATGTGGCAGAAATGATCGTTTCACTTTGATCGAGTCTTAAATTCAAACTAATGAGAACACTTAACAGCCTTCCCGTTTCTGCATTTGGTTAAATTCAATAAACTCCGTCCGCTTCCTTGAACTCTTAAAGTCTAGCACTTTGTGTGAAAAGGTTAATGTCCAATATGGCTCTGCACTGGTTCAACAAAATGTCTGTTGAACAAACTCCCTCTATTACAACTTCAGCAGGGGTTTACTAAATGTTAAACAGAGGCAAGTGCTCGATTATCATTGTGCATATATTCTTACATAAGATGGCTCAAAACACTGACATCCTCACTGTGATAGAACAATGCTGCTTAGATCACTGCATCATTAATTAAATGGTAGAGACTATCAAAGAAAGCAACACAATGAAGCAAACATCAGCTAGAACAACTTGCAAGGGAAAAGGGAAGAGCTAGAAATAGGAAGGCATGCAGAGGACTGACAATTGTCTCCTAAAAATAAGTACGTACGCTTGGCGTCGCACTCTTCAAATGCAGCAAAGAGAATAATCACACCTGACAGCTTCAACATTAAGTCAATTAAGCCCACGGAAAATTAATCTAATATTAACCCCCTAAAACTCTGCCCTGCAAGTTACAGCCTCTTCAGACTGTAGAAAAGCAGTACTACTTAAAGCAAAAACTTCACAGAAACAAGAGCGTTACTTCATAGCTCTGCTCCTTTTAGTCCATAATCactacacaaacaaaaaaaaaaaaaaactttgtctgTGCAAAAATATTCACAGGTTCATAGCAAGGACACGAAAGAAAAGCTGAAGCGAAGCATATCGCAGCTCTCAGGAGAGCATGCAGAAGACGACGGGAGGCTGGGTCAGGAGACATTTGTATGCAGCACTGAGAGGACAGACATTAGCATCAAACTAAAGAAGCCGCTGCTGCAGTAGCTCTTTGTGTTGCAATCAAGAGTTGGGGGCAGGGATGCACAGGGGGGAACAGAGAGCAAAAACACCAGTTAACGTCTAATTGAAGTCAATGAGCGTCTTAGGAGCCGCTGAATCAGGGTACAGAAACCATTAGAggacgaaaaaaaaaatgcatgacaaaacagtgactgACAACACCTTGGGCAAGATCTGGAAACTCTGAATGCCACCCTAGACTAGCCGTAATAAGACTTATTGGcttcctgcagaaaaaaaaattaatcatcaAGCTTTATAGCTTGAGAGAaaactgttattaaaataaacatccaGTCACATCCTGGCAGAGATTTTTTAAGAGGAAAGCTCCAAATCTGAGATATTGGCATTTATATCAAAGCTGTTTTTTGGTCACCTTCCTAATAGTAGTAGGAGAGACAAAACTTGAACAACAGTGAAATACTGAAATTAAGTGTGCCTGAACAGACTGGTTAATGTTGTCCTCTAGAGGGTGCTATAAAATACCATGAGTGAAGAACCAATGCAACTTATTTTCTCTAGCTCCAACCTTGCTAAAGACAGTTTTATATTGGTAAGGGCAACCACAGAGGGAATGTAGGTCTGTGTAGCTTATATGTTCTGCCATCCAGAAGGCGTAGCTAGGAATTTCAATGCTGTTGGACTAAAGAAAGGCTACAACTTACATTTTACTGAGCCAAGAACATCCACCAATGATGTTGCTTTGTTTTGGATTTAGTGAAGCTGACCTTTGCTTTCTGCGCTACTCAAAAACACCTTGCATGATTATTAAAAAGTTTACCTGAAATGCACATCAGCACCATTCccaaaacaaaggaaaaaaatgaCAAGACAAGCCTTGTATGCTTATCCTGTAGGCATATGAGGTAGGGGAAGAATGATTTTATAATGAAATACCGAAACATCTTTTTAAACTATCAGCTTATAAGCAAAAATCACTGAACATGAATCCATTTGCACTCctgtaaacctttttttattattttttatgttgggGGAAGTGGTTATCATGCCATTCGCTGAATCCTGCTGCTCACTCTGGCCAAATGAATCCCCTttcaacgaaaaaaaaaaagaaaagaaaaaaaaaacacaacccaAAAACTTCTTTGTGCAAAACTGAATGCTTCTCACCCTCCTCTCCCCAAAACCCCgcttttttccttttgtattgtaATATGTACTATTTCATATCTGTATAGTGGGTAAAGATGTGGCCAACtgaaaagctcttttttttttccttaagacgtatatttttaaataaaaatgttacaatttataaatgctttggtcTAGTATGCTCTTCAGGTCCCCAAAGTCTTACGTGCC

Function

symbol description
lrrtm2 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRTM2 (leucine rich repeat transmembrane neuronal 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-8 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRTM2 (leucine rich repeat transmembrane neuronal 2).

Ensembl:

ensembl_id ENSDARG00000071374

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045766 True 5226 mRNA 0.44 2 34606966 34612832
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Neighbor

gene id symbol gene type direction distance location
XLOC_023057 NA coding upstream 230417 34370904 ~ 34376549 (+)
XLOC_023056 NA coding upstream 467599 34131744 ~ 34139367 (+)
XLOC_023055 gbx1 coding upstream 490440 34113424 ~ 34116526 (+)
XLOC_023054 asb10 coding upstream 499348 34085940 ~ 34107618 (+)
XLOC_023053 H2BE1 coding upstream 534878 34069675 ~ 34072088 (+)
XLOC_023059 mchr2 coding downstream 193990 34806822 ~ 34823043 (+)
XLOC_023060 NA coding downstream 260719 34873551 ~ 34874670 (+)
XLOC_023061 NA coding downstream 307852 34920684 ~ 34920972 (+)
XLOC_023062 NA coding downstream 319670 34932502 ~ 34933751 (+)
XLOC_023063 rb1cc1 coding downstream 357848 34970680 ~ 35003375 (+)
XLOC_023052 NA non-coding upstream 757533 33842363 ~ 33849433 (+)
XLOC_023050 CU019563.1 non-coding upstream 837563 33769287 ~ 33769403 (+)
XLOC_023048 NA non-coding upstream 1063054 33533520 ~ 33543912 (+)
XLOC_023064 NA non-coding downstream 447170 35060002 ~ 35101929 (+)
XLOC_023065 NA non-coding downstream 566201 35179033 ~ 35179825 (+)

Expression

Expression of XLOC_023058(lrrtm2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_023058(lrrtm2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_03630643_03637287 LRRTM2 coding CI01000000 null 3630591 ~ 3638076 (+)