G360276 (sync)


Basic Information

Item Value
gene id G360276
gene name sync
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4639016 ~ 4648000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU409301
AGCGTATGCAGTACACATTTATTGGCAGACAAATAGTATTCGCTAGACAGCATGAATTTCTTGTTTGAAAACACATTTCAAATCTTACATTTGCAGGGATTTGTTAGTGTAATTAATTGTTCTTGTCTTAGATCTCGAGCCTTGTATGTTGGCCTTTTGCAATGCAGTAAGATGGGGCTTCGTCCCAAACGgagctctattctctatatagtgcactacctttggtCCTGGTAAAAAATAAGGGCCCTATACAGGGATAGCAcgctggtaaaaaaaaatagcactatatagggaatagattgccatttgggatgtacatcTTGGTCTCTTGAAGCGCAGTGTGATCcatctccagcagggggcagggTAGTTGGTAGTTTAGGGTCGACAGCGCTGGATGAAGCGGGGGTAGAGACACACGTCTCTGATGTGGTGTCTGTTCAGCAGCCAGGTTAGAAACCTCTCTAGGCCGAGCCCGTAGCCACCGTGGGGACAGGTACCATACTTCCTCTGGTCAGTGTACCAGTAGTAAGGGGTTGGGTCAATGCCCTCCCTCTTGTATCCCTCCAGCAGTTCCTCAGCATCCCAGATCCTCATAGACCCTCCAACTATCTCTCCAACATTAGGCATCAGCACATCCACCGACTCGGTGAGGCGTCGGTCCTCAGGACAGCGCTGCATGTAGAAGGACTTGATCTCAGCCGGGAAGCGGCACAGCAGGATGGTCTCACCGATGGCATCAGTCATCAGCCTCTCTGGGGCCTCTGGGATGTCCTCTCCAAACTCATAGTATGTCCCATCATCTTTTTTGATGTCGTGCTCCTTCAGCCAGATGATGGCCTCAGAGTAGTTCATCCTCTTGAAGGGCCTCTTGGGGGGCTTGAAGTCAGGGTTGACTTGATAGAGTAGAGAAGCAGCAGGTGACTTCAGGACTCTGTCCACCACGTCACACACCAGATCCTCCAGTCTGCTCAGTAGGTCCTCATAGGTCATGAAGGGGCACTCTGCCTCTATGTGAGTGTACTCAGACAGGTGCCTGCGAGTGCGGGACTGCTCTGCGCGGTAGGACTGAGCGATACAGAAGGTGTCTCCCAGAGCAGGGATGCAGGTCTCCAGGTAGAGCTGAGAGGACTGGGTCAGGAACGCCTCCTCCCCAAAGTAGTTGAGGTTGAACAGGGTGGAACCTCCCTCCACCTGGGTCTGCACCAGAGTGGGTGGGGTGATCTCATAGTATCCGCGGGCGAAGAAGTGATCCCTGAAGCACTGTGTGACAGTGGAGCGGACCCGGAGGATCTTGGACACGTTCTCCCCACGGATCATCATGTGTCTGTTGTTGAGCTGAACGTCCACATCAGACTCCTCATTCAGCAGGTTGTCAGCTCCTCCAGCCGGCGCCAGACCCACCAGCTCCCAGAAGTCACAGTGCAGCTCATGACCACCAGGGGCCTGCTTTCCCTCAGGTACTTGCTCCACTGTCCCATACAGAGCCACTGTGCTTTCAGTGGACAGCACCAGGGCATTGTAGCACTGACAcaattTATTGTTGAGAACACACTGCAGGAAACCAGTTCCATCTCTCAGCACAATGAACAGCAGGTTCTTTCCTTGTTTTCTCATTCGATGCACCCAACCAAACaccttcactctctcccctcgGAGAGGCTCCAGCTGATAGATTTTGACCGTTTTGGGCTTTGGAAGGCTGGAGTCGTTCTCAATGGTGATTTTCTTAGCTTCTTCTAGGTTCTTCTCTCGTCTCTCAGAATCCTCTGCCTCCTTTTTGTCTTTGGAGTCGCTCTTCATCTGCTCTCTAGCAAATAACTTGATCACATTTTTCATCTGCGTCTTGGAGATCACTGCCCAACGCTCTCCTTCCTTCTGAGAGTCCACATAGATGGTTGGGAATGGCTCCTTTCCAGCAAATGTCAAAGCCCTCAATGAGGTCTTGAAAGGCTTCCTCTCTGTTCCGTCACCATCCTGGTCATTGCCTTCTTTGTCAGACACATACAACTCACCCACTGAGAGTTCGCCTGTGGTTTTCGTTACCTCCTCTGCCATACCCACGTACAAATTGTATCAAATGTGTATATTTTAACGGATTTACTAGcgagctaataataataatacgaaAATGAATCAGCCCTCGTTGGGGTTTGTGCGCATGCGTACGGCGAATACAATTTCCGGATAGTTCGTGAATGGTGACTGGTTGCAGTAAATTTCACGTGGATTCGTTCC

Function

symbol description
sync Predicted to be located in intermediate filament. Orthologous to human SYNC (syncoilin, intermediate filament protein).

NR:

description
asparagine--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409301 True 2238 TUCP 0.50 15 4639016 4648000

Neighbor

gene id symbol gene type direction distance location
LOC110523122 onecut2 coding upstream 40240 4561350 ~ 4598776 (+)
grin3a LOC106572512 coding upstream 1003901 3547948 ~ 3635115 (+)
musk musk coding upstream 1309750 3258931 ~ 3329266 (+)
si:busm1-57f23.1 LOC106572555 coding upstream 1490426 3140042 ~ 3148590 (+)
LOC110524930 LOC106572564 coding upstream 1531777 3032849 ~ 3107239 (+)
LOC110523121 LOC106572199 coding downstream 6146 4654146 ~ 4670585 (+)
tcf4 tcf4 coding downstream 260459 4908459 ~ 5339341 (+)
LOC110524934 LOC106572350 coding downstream 769468 5417468 ~ 5458865 (+)
LOC110524936 NA coding downstream 929014 5577014 ~ 5577940 (+)
LOC110522836 LOC105008486 coding downstream 1024649 5672649 ~ 5760948 (+)
G360280 NA non-coding upstream 20826 4615016 ~ 4618190 (+)
G360321 NA non-coding upstream 51144 4587403 ~ 4587872 (+)
G360297 NA non-coding upstream 60392 4578268 ~ 4578624 (+)
G360310 NA non-coding upstream 84796 4553611 ~ 4554220 (+)
G360292 NA non-coding upstream 116739 4519335 ~ 4522277 (+)
G360333 NA non-coding downstream 13064 4661064 ~ 4661487 (+)
G360673 NA non-coding downstream 68106 4716106 ~ 4716757 (+)
G360680 NA non-coding downstream 72048 4720048 ~ 4720485 (+)
G360681 NA non-coding downstream 72614 4720614 ~ 4720825 (+)
G360694 NA non-coding downstream 81597 4729597 ~ 4729842 (+)
G360287 NA other upstream 91160 4547035 ~ 4547856 (+)
G360261 NA other upstream 218947 4419741 ~ 4420069 (+)
G360234 NA other upstream 293499 4344082 ~ 4345517 (+)
G360121 NA other upstream 627660 4008748 ~ 4011356 (+)
G359438 NA other upstream 1259697 3347509 ~ 3379319 (+)
G360985 NA other downstream 648870 5296870 ~ 5299403 (+)
G361671 NA other downstream 1155828 5803828 ~ 5927926 (+)
G362297 zbtb43 other downstream 2537926 7185926 ~ 7189819 (+)
G362554 NA other downstream 3042440 7690440 ~ 7692514 (+)
G362662 NA other downstream 3270922 7918922 ~ 7919565 (+)

Expression


Co-expression Network