G360848


Basic Information

Item Value
gene id G360848
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4996456 ~ 4997278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU409988
atcaaatctaattttagtTTGTCACATGTTTTGTaaagaacaggtgtagactaacagtgaaattatTGCTTACGggtgggtccttttccaacaacaGCAGTTAAAGATAAAGAGACAAATAAATAATATTGATACAagtaataaatacacagtgaataacgagtacaaataacatggttatatacaaggactaccagtaccgagttgatgtgcaggagtacgaggtaattgaggtggctatgtacatatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacatcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaagtatagataatagacagtaatagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagacattagacagtaacagcagtatac
>TU409991
atcaaatctaattttagtTTGTCACATGTTTTGTaaagaacaggtgtagactaacagtgaaattatTGCTTACGggtgggtccttttccaacaacaGCAGTTAAAGATAAAGAGACAAATAAATAATATTGATACAagtaataaatacacagtgaataacgagtacaaataacatggttatatacaaggactaccagtaccgagttgatgtgcaggagtacgaggtaattgaggtggctatgtacatatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagacattagacagtaacagcagtatactgtaggtaggggtaaagtatagataatagacagtaatagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagacattagacagtaacagcagtatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409988 False 674 lncRNA 0.36 3 4996456 4997278
TU409991 True 627 lncRNA 0.37 2 4996456 4997278

Neighbor

gene id symbol gene type direction distance location
LOC110523121 LOC106572199 coding upstream 325871 4654146 ~ 4670585 (+)
LOC110523122 onecut2 coding upstream 397680 4561350 ~ 4598776 (+)
grin3a LOC106572512 coding upstream 1361341 3547948 ~ 3635115 (+)
musk musk coding upstream 1667190 3258931 ~ 3329266 (+)
si:busm1-57f23.1 LOC106572555 coding upstream 1847866 3140042 ~ 3148590 (+)
LOC110524934 LOC106572350 coding downstream 420190 5417468 ~ 5458865 (+)
LOC110524936 NA coding downstream 579736 5577014 ~ 5577940 (+)
LOC110522836 LOC105008486 coding downstream 675371 5672649 ~ 5760948 (+)
LOC110523126 LOC106572095 coding downstream 1491124 6488402 ~ 6555494 (+)
LOC118964554 angptl2 coding downstream 2005174 7002452 ~ 7031982 (+)
G360842 NA non-coding upstream 14872 4981132 ~ 4981584 (+)
G360813 NA non-coding upstream 66211 4929350 ~ 4930245 (+)
G360784 NA non-coding upstream 119387 4872532 ~ 4877069 (+)
G360786 NA non-coding upstream 120341 4875536 ~ 4876115 (+)
G360782 NA non-coding upstream 124182 4866875 ~ 4872274 (+)
G360851 NA non-coding downstream 5337 5002615 ~ 5003303 (+)
G360858 NA non-coding downstream 14096 5011374 ~ 5015669 (+)
G360864 NA non-coding downstream 30207 5027485 ~ 5028257 (+)
G360869 NA non-coding downstream 34869 5032147 ~ 5032660 (+)
G360903 NA non-coding downstream 89135 5086413 ~ 5086772 (+)
G360276 sync other upstream 348456 4639016 ~ 4648000 (+)
G360287 NA other upstream 448600 4547035 ~ 4547856 (+)
G360261 NA other upstream 576387 4419741 ~ 4420069 (+)
G360234 NA other upstream 650939 4344082 ~ 4345517 (+)
G360121 NA other upstream 985100 4008748 ~ 4011356 (+)
G360985 NA other downstream 299592 5296870 ~ 5299403 (+)
G361671 NA other downstream 806550 5803828 ~ 5927926 (+)
G362297 zbtb43 other downstream 2188648 7185926 ~ 7189819 (+)
G362554 NA other downstream 2693162 7690440 ~ 7692514 (+)
G362662 NA other downstream 2921644 7918922 ~ 7919565 (+)

Expression


Co-expression Network