G362106 (LOC106572043)


Basic Information

Item Value
gene id G362106
gene name LOC106572043
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6777761 ~ 6782258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU411575
CCCCATTGCACTTAATCAATTTCCCCCCCCAAGTCATACTGTGCAAATGTTTCCGCGTGGACGTCGTTTCCAGACGGGTAAGTGCTACACATGAAACATTAGAATGTTCAGCATTCTATACAATGGCAAGTACAACCACTCCACGTTGCTTGTTGGGCCTTTGCTAgcgtgtgtctgtatgtagccttacCCCCAGTCAGGCTTGTAGGTGTCAGATGCGCGGGGACCCTTCAGGACCAGTATCAGGAACTCGTGCATCTCCAGCAGGATGGAATCAGCGCTGCTTTTATTAAAGAACCCAGTGAGCAGCCTgtgctcctcctctcccaggGCCTTCCTGTACTCTTCTGAGATCCCTTCAAATGGGTCCCTCTTGAGCCACAGCATGTTTTCTGATTTGAGTGATGTCAGGAGCTGCCACAGTGCCAAACAGTGCTTCAGATAGTATCTGCCCAGGGCCGTTAGGATGTGTGGAGCTGTTTGATCTCCCATCTGCAGCACCTCCTCCAGGTAGCTGCCCAGCTCCATGTGGGGTTCTCCCCCGGTCATAGCCAGGAACCCCAGGGCCACCTCTACGGTGGAGAGGGCCTCACACACCTCATTGTACGACTTCAGCTCTCCAACTAGTGTCGACAGGGCCCGCGAGGGCAGAGGCACCTAGAGACACAAAGACAAATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAAGTAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAAGTAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAGTAGAGA

Function

NR:

description
E3 ubiquitin-protein ligase rnf213-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411575 True 1054 lncRNA 0.51 3 6777761 6782258

Neighbor

gene id symbol gene type direction distance location
LOC110523126 LOC106572095 coding upstream 222267 6488402 ~ 6555494 (+)
LOC110522836 LOC105008486 coding upstream 1016813 5672649 ~ 5760948 (+)
LOC110524936 NA coding upstream 1199821 5577014 ~ 5577940 (+)
LOC110524934 LOC106572350 coding upstream 1318896 5417468 ~ 5458865 (+)
tcf4 tcf4 coding upstream 1438422 4908459 ~ 5339341 (+)
LOC118964554 angptl2 coding downstream 220194 7002452 ~ 7031982 (+)
LOC118964556 NA coding downstream 948726 7730984 ~ 7741925 (+)
mapkap1 mapkap1 coding downstream 959989 7742247 ~ 7868565 (+)
slc27a6 slc27a6 coding downstream 1467901 8250159 ~ 8289257 (+)
isoc1 isoc1 coding downstream 1508597 8290855 ~ 8307147 (+)
G362096 NA non-coding upstream 33131 6744345 ~ 6744630 (+)
G362095 NA non-coding upstream 33545 6743928 ~ 6744216 (+)
G362092 NA non-coding upstream 37127 6740405 ~ 6740634 (+)
G362079 NA non-coding upstream 59041 6718410 ~ 6718720 (+)
G362053 NA non-coding upstream 83080 6693119 ~ 6694681 (+)
G362118 LOC106572043 non-coding downstream 13971 6796229 ~ 6799116 (+)
G362111 NA non-coding downstream 45624 6827882 ~ 6830273 (+)
G362149 NA non-coding downstream 53220 6835478 ~ 6836302 (+)
G362156 NA non-coding downstream 59088 6841346 ~ 6841722 (+)
G362158 NA non-coding downstream 59702 6841960 ~ 6843434 (+)
G361671 NA other upstream 849835 5803828 ~ 5927926 (+)
G360985 NA other upstream 1478358 5296870 ~ 5299403 (+)
G360276 sync other upstream 2129761 4639016 ~ 4648000 (+)
G360287 NA other upstream 2229905 4547035 ~ 4547856 (+)
G360261 NA other upstream 2357692 4419741 ~ 4420069 (+)
G362297 zbtb43 other downstream 403668 7185926 ~ 7189819 (+)
G362554 NA other downstream 908182 7690440 ~ 7692514 (+)
G362662 NA other downstream 1136664 7918922 ~ 7919565 (+)
cdc42se2 cdc42se2 other downstream 1993074 8775134 ~ 8849107 (+)
G364850 NA other downstream 2446580 9228838 ~ 9229231 (+)

Expression


Co-expression Network