G362111


Basic Information

Item Value
gene id G362111
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6827882 ~ 6830273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU411584
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacatagagacagtagatctagctggtctgtcattttataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtagatctagctggtctgtcacattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC
>TU411585
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC
>TU411586
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggcctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgacataacataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC
>TU411587
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacatagagacagtagatctagctggtctgtcattttataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggcctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC
>TU411588
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggcctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC
>TU411591
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggcctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgacataacataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttagattataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgttagattataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcacattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC
>TU411592
taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcatattataatagagacatagagacagtagatctagctggtctgtcattttataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtagatctagctggtctgtcataatataatagagacagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggcctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411584 False 925 lncRNA 0.37 2 6827882 6830273
TU411585 False 1061 lncRNA 0.37 2 6827882 6830273
TU411586 False 1063 lncRNA 0.37 3 6827882 6830273
TU411587 False 1482 lncRNA 0.37 3 6827882 6830273
TU411588 False 1468 lncRNA 0.37 3 6827882 6830273
TU411591 False 1507 lncRNA 0.37 4 6827882 6830273
TU411592 True 1451 lncRNA 0.37 3 6827882 6830273

Neighbor

gene id symbol gene type direction distance location
LOC110523126 LOC106572095 coding upstream 272388 6488402 ~ 6555494 (+)
LOC110522836 LOC105008486 coding upstream 1066934 5672649 ~ 5760948 (+)
LOC110524936 NA coding upstream 1249942 5577014 ~ 5577940 (+)
LOC110524934 LOC106572350 coding upstream 1369017 5417468 ~ 5458865 (+)
tcf4 tcf4 coding upstream 1488543 4908459 ~ 5339341 (+)
LOC118964554 angptl2 coding downstream 172179 7002452 ~ 7031982 (+)
LOC118964556 NA coding downstream 900711 7730984 ~ 7741925 (+)
mapkap1 mapkap1 coding downstream 911974 7742247 ~ 7868565 (+)
slc27a6 slc27a6 coding downstream 1419886 8250159 ~ 8289257 (+)
isoc1 isoc1 coding downstream 1460582 8290855 ~ 8307147 (+)
G362098 NA non-coding upstream 26585 6752361 ~ 6801297 (+)
G362118 LOC106572043 non-coding upstream 28766 6796229 ~ 6799116 (+)
G362106 LOC106572043 non-coding upstream 45624 6777761 ~ 6782258 (+)
G362096 NA non-coding upstream 83252 6744345 ~ 6744630 (+)
G362095 NA non-coding upstream 83666 6743928 ~ 6744216 (+)
G362149 NA non-coding downstream 5205 6835478 ~ 6836302 (+)
G362156 NA non-coding downstream 11073 6841346 ~ 6841722 (+)
G362158 NA non-coding downstream 11687 6841960 ~ 6843434 (+)
G362122 NA non-coding downstream 37235 6867508 ~ 6868310 (+)
G362234 NA non-coding downstream 192334 7022607 ~ 7022965 (+)
G361671 NA other upstream 899956 5803828 ~ 5927926 (+)
G360985 NA other upstream 1528479 5296870 ~ 5299403 (+)
G360276 sync other upstream 2179882 4639016 ~ 4648000 (+)
G360287 NA other upstream 2280026 4547035 ~ 4547856 (+)
G360261 NA other upstream 2407813 4419741 ~ 4420069 (+)
G362297 zbtb43 other downstream 355653 7185926 ~ 7189819 (+)
G362554 NA other downstream 860167 7690440 ~ 7692514 (+)
G362662 NA other downstream 1088649 7918922 ~ 7919565 (+)
cdc42se2 cdc42se2 other downstream 1945059 8775134 ~ 8849107 (+)
G364850 NA other downstream 2398565 9228838 ~ 9229231 (+)

Expression


Co-expression Network