G364109


Basic Information

Item Value
gene id G364109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7799915 ~ 7812933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU413927
gacgaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggatgactaatactgtgggtacaaaggaggactaatactgttggtataaaggaggactaatactgtgggtataaaggaggactaatacagtgggtttaaggaggactaatactgtgggtacaaaggaggactaatacagtgggtataaaggaggactaatactgtgggtacaaaggagggctaatactgtgggtacaaaggaggactaatactgtgggtataaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtacaaaggaggactaatactgttggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggaatAATACAGTGGGTttaaggaggactaatactgtgggtacaaaggagggctaatactgtgggtacaaaggaggactaatactgtgggtacaaaggaggactaaCACTGttggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggaatAATACAGTGGGTttaaggaggactaatactgtgggtacaaaggagggctaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaaggaggactaataatGTGGGTATAAAGAGGACTAATATGGCAGGTACaaagaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggacgaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaagactaatactgtgggtataaagaggactaatactgtgggtataaaggaagactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaagactaatactgtgggtataaaggaggactaatactgtgggtataaaggaagactaatactgtgggtataaaggaggactaatactgtgggatATAAAAG
>TU413929
CgctccaaaatatattttaaatatcaGTTAACGGTATCgtttttttttggcaaggaaaatatcggatatTGGCCAAATCGGTGCATCACaactatatacatacagtattagTCCTCTTTGTACCTGCCGTATTAGTCctctttatacccacagtattagtcctctttaaacccacagtattagtcctcctttgtacccacagtattagtcctcatttgtacccacagtattagtcctcctttatacccactgtattagtcctcctttataccccaCCGTAAAAAGAGGACTAATAcggtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtacaaatgaggactaatactgtgggtacaaaggaggactaatactgtggatataaagaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtacaaaggaggatataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtacaaagtaggactaatacagtgggtacaaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtataaaggaggactaatacaggGGGattaaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatacagtgGGTACAAAGGAGgactaatactgtgggtacaaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtacaaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgttggTATAAAGGACTAATACGGTGGGGTATAAAGatgactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatacagtgggtataaaggaggactaatactgtgggtacaaaggaggacgaatactgtgggtataaaggaggactaatactgtcgGTATAAAaaaggactaatactgtgggtacaaaggagggctaatactgtgggtacaaaggaggactaatacagtgggtataaaggaggactaatactgtgggtataaaggaggactaatacagtgggtataaagaagactaatacagtgggtataaaggaggactaatacagtgggtataaaggaggactaatacagtgggtataaaggagaactaatactgtgggtataaaggaggactaataatGTGGGTATAAAGAGGACTAATATGGCAGGTACaaagaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggagtAATACGGTGGGGTATAAAGatgactaatactgtgggtataaaggaggactaatactgtgggtataaagatgactaatactgtgggtataaagaggactaatacagtgggtataaagaggactaatactgtgggtacaaaggacgaatactgtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaggactaatactgtgggtataaagaggactaatactgtgggtataaaggaggactaatacagtgggtataaaggaggactaatacagtgggtataaaggaggactaatattgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtataaaggaggactaatactgtgggtgtaaaggaggactaatacagtgggtataaaggaggactaatactg

Function

NR:

description
uncharacterized protein LOC110487210

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU413927 False 1466 lncRNA 0.40 3 7799915 7805368
TU413929 True 2313 lncRNA 0.40 3 7802411 7812933

Neighbor

gene id symbol gene type direction distance location
LOC110523137 pbx3 coding downstream 77788 7593362 ~ 7722127 (-)
mvb12ba mvb12b coding downstream 362996 7394813 ~ 7436919 (-)
LOC110523135 lmx1b coding downstream 432118 7272318 ~ 7367797 (-)
LOC110523134 zbtb43 coding downstream 605481 7187898 ~ 7194434 (-)
LOC110523130 ralgps1 coding downstream 636443 6867878 ~ 7163472 (-)
LOC110524943 fbn2 coding upstream 69456 7882389 ~ 8204518 (-)
LOC110523142 LOC106571805 coding upstream 393558 8206491 ~ 8229291 (-)
hint1 hint1 coding upstream 947898 8760831 ~ 8765948 (-)
LOC110524946 LOC106571878 coding upstream 1044684 8857617 ~ 8864575 (-)
syk syk coding upstream 1332204 9145137 ~ 9199533 (-)
G364044 NA non-coding downstream 61823 7697082 ~ 7738092 (-)
G364037 NA non-coding downstream 112866 7686359 ~ 7687049 (-)
G364007 NA non-coding downstream 172874 7625556 ~ 7627041 (-)
G363996 NA non-coding downstream 211920 7587631 ~ 7587995 (-)
G363944 NA non-coding downstream 301203 7498181 ~ 7498712 (-)
G364113 NA non-coding upstream 9107 7822040 ~ 7822497 (-)
G364118 NA non-coding upstream 26735 7839668 ~ 7845809 (-)
G364157 NA non-coding upstream 105865 7918798 ~ 7919225 (-)
G364166 NA non-coding upstream 123011 7935944 ~ 7938576 (-)
G364174 NA non-coding upstream 189354 8002287 ~ 8020984 (-)
LOC110524941 LOC106572051 other downstream 1073935 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 1245200 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 1845664 5945164 ~ 5954687 (-)
G361170 NA other downstream 2718047 5080578 ~ 5081868 (-)
G360703 NA other downstream 3060213 4738312 ~ 4739702 (-)
G364322 NA other upstream 490334 8303267 ~ 8304183 (-)
G364754 NA other upstream 1234609 9047542 ~ 9099000 (-)
G365752 NA other upstream 1376736 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 4321119 12134052 ~ 12136790 (-)
G368921 NA other upstream 4892633 12705566 ~ 12706092 (-)

Expression


Co-expression Network