G364312


Basic Information

Item Value
gene id G364312
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8286015 ~ 8289236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU414147
TCTTCCATATCATATTCACAATGGCGCAGACTATTCCCATAATCAGCTAGGCTAAATATGTGTTCTAAAAAAAAACTGTTCATGAAGGCTTCAATGGATGACAATGGAaaacacaaatacagtacatatactGTTGGACCTCAATGGGTTAAAAACCCTACAGCTTGCAAGGTCTTCCCAGCGCACACAGTAAAAGTACCCTGAGAGAATCAACACAACGGGTGGTATAACTAGTTCCACTTGATGCAGCCACAGCGCTTTATTACCTGTTGTAAGAAAGCATCAGTCTTGTTTTAAAAGCCTGTACTACGTCTCTCTATGTATCTGTTGTAAGAAAGCATCAGTCTTGTTTTAAAAGCCTGTACTACGTCTCTCTATGTATCTGTTGTAAGAAAGCATCAGTCTCGTTTTAAAAGCCTGTAATACGTCTCTCTATGTATCATGTTTTCAACTGACTGAAATTTGAGATGATCATTATGAGGTAAGACTTTAtcaaagggggagaggggggagggggggggggggtgtcatacatgattataacatgttttaCAATGCATTATAAACCACATCGTAATGCATTCAACATAACTGTCAGTGTTAAGTAGTGTTATagcttttacacacacactgacattaaCAGGACTGTCAGATCACTCTGACTATTTACTGTTGTAGCCCTAAGACCCTAGCTGTTACTGCAAAATGTACAGGCATATTTTCCATTTTGGAAAGATGTGTTTCGGGTAAAAGCAAAGATGACAAATGACACCAGAAATTGAATCTGAATCGAACATTTTTGAATTTGTATAAGGAAATGGAATCCTATTGAATTCGTATAAGGAAATGGAATCCTATTGAATTCGAAATGGAATCTGGTGGCACTAGTATCACTATAAGTGTCTGAAGGAAAAGTTGAAAATGGTGGTCCATATAACTATAAGGGTTGATGTATCTGGCACACAAGCACTGGACACACATTCACCCAAATTAAATACTATCAAATTAAAATGATAAACAACAAATGCTGTTAAAAACACCATTTgaccaaatattcaacattttaaataaTCAAAGTGAAATAAATGTGTTTGGCTGTCCCAAACAGGAAAGTAAAACAAGAGGTTTCAGTCAACCTAAAAATCGCTGATTTTCACACTGCGCAAATCAACTTCATTGCAATCATTCATTGTGCTTAAATGATATGAAAATTATATTATAGTCCTAGCTAGATTAATCATAGGGACTTGATCATCTCAATGAATTCGACATTGTAAACTATAGTCTTCTTCACCAAAACATAGTTCAAATAGCTGTACAAATTAACAATACCTATACATAGAAAACTCTTAAACAAAGGGCTGAATTCAGTCAAACCTGCCTTAGCCTCAAACATGCCTTAGTAAGTAGAGATACTGCATAAATGAGGCCAACTACCCAGATGCCTAATTACAAAGCTAGGAGCATCTACTTATAAGAGGTGGCTTGCTTGTTCTTttactagcctggtctcagacccgttgtctccttctatagcctggtcccagatctgttgtctccttctatagcctggtcccagatctgttgtctcctcctgtagcctggtcccagatctgttgtctccttctatagcatggtcccagatctgtttgtgctcttgccaactccattgcaAGTCAAATATGACAAGTATTGGCATGACATTGGCCTCAGGCTAGTATTTTACAGTACCAAAAccacattgttattttattgagGGGATAAGGCATTAACACTGGTTTGACTGAATTGGACCCTTAAAAGAATCACTGACAAACTTCTCAGCTGTCATTTGACAGTAAATATAATCACGTTGCATCACATTCAGACCCCCGGGTTCAAATAGTACTTGTTTTCTTGAGGTGGTCGTACAATGGAACCACTGGAACAGATTGAAAAGTACAAGTAAGGAAATAAAGACTACTTGGACCTGGGTCTGGTTACATCTCAAGAGTAACACAAGATGGTAATGACTAACTGGCAAAACTGTTGAAAACAAGACATAGTGCATGATGCCCTTAATAAACTAGTGCTGTGCCAGTGGACTGTACTATCTCAACACAGTTACTGGACGACACCTAACAAATGTACTTTTGCGAAGCACACCTACTTTGGTTTAAATTATGAGCCTTGActatatgtataaaataaatacaatttttaaaaagaAAAATAATTACTACCATTTGTAGCAAAGCGTATGGACCGTTTCTGATATTAAAAGTTCATTCCTACGTTGGTTAGTGTAGTAGGTCAGAACGAAGAATTTTGGGTGGCCAGAATGTGGTCATCGGTGCCTCAAAACACACGACGCCTCTATTTAGTCTGCCATTCGTCTTTATTTCAACGAGGAACTAGTGACACTTTATGACATCCCATCCGCAAATTAAAAATGGCACAGACGGACAGTGGAAGTGCTGATTGTCGAGGTTCACTGGTCTCAAGTCAATTTAGCCTTCTCAGCTGAACTGTCTTGACAATAGATCTGGAAACCAGAGAGGAAAACGGCTATTTtttttagtaaaaaaaataataaaatcagATGAGGCACAAATTACACCCCCATCAGTATAAGACTGACCCCCCCCTATTCATCATTAACCCACTCTGTTGATCCCGACCACTCATACGAGACAATTTCAGACATTATACACAATTAGGAATAGACCCAATTGACGGTCTCTCGGCCCCTCTTCGAAACGGCACAACTATGCTGCCACCGTCTCAGTGAACCAAATGGGTTGGTGGTTTTAGCTACGGTTAACCACTATAGCTTCCGCTCGCCAGCCAAAATGCTGCCGTACAGCGTGTTCGTGAGGGGAACGTAGCTTTTCTCGGAGAAATCCAGGAAATAGAGTGGGCTGCAGATTGTTGAAGGGTTGAATCCGCTCTCCACTAGATTGAATTTCTGCTGCTTGAAGGTTCCCGTCATTTC
>TU414148
TCTTCCATATCATATTCACAATGGCGCAGACTATTCCCATAATCAGCTAGGCTAAATATGTGTTCTAAAAAAAAACTGTTCATGAAGGCTTCAATGGATGACAATGGAaaacacaaatacagtacatatactGTTGGACCTCAATGGGTTAAAAACCCTACAGCTTGCAAGGTCTTCCCAGCGCACACAGTAAAAGTACCCTGAGAGAATCAACACAACGGGTGGTATAACTAGTTCCACTTGATGCAGCCACAGCGCTTTATTACCTGTTGTAAGAAAGCATCAGTCTTGTTTTAAAAGCCTGTACTACGTCTCTCTATGTATCTGTTGTAAGAAAGCATCAGTCTTGTTTTAAAAGCCTGTACTACGTCTCTCTATGTATCTGTTGTAAGAAAGCATCAGTCTCGTTTTAAAAGCCTGTAATACGTCTCTCTATGTATCATGTTTTCAACTGACTGAAATTTGAGATGATCATTATGAGGTAAGACTTTAtcaaagggggagaggggggagggggggggggggtgtcatacatgattataacatgttttaCAATGCATTATAAACCACATCGTAATGCATTCAACATAACTGTCAGTGTTAAGTAGTGTTATagcttttacacacacactgacattaaCAGGACTGTCAGATCACTCTGACTATTTACTGTTGTAGCCCTAAGACCCTAGCTGTTACTGCAAAATGTACAGGCATATTTTCCATTTTGGAAAGATGTGTTTCGGGTAAAAGCAAAGATGACAAATGACACCAGAAATTGAATCTGAATCGAACATTTTTGAATTTGTATAAGGAAATGGAATCCTATTGAATTCGTATAAGGAAATGGAATCCTATTGAATTCGAAATGGAATCTGGTGGCACTAGTATCACTATAAGTGTCTGAAGGAAAAGTTGAAAATGGTGGTCCATATAACTATAAGGGTTGATGTATCTGGCACACAAGCACTGGACACACATTCACCCAAATTAAATACTATCAAATTAAAATGATAAACAACAAATGCTGTTAAAAACACCATTTgaccaaatattcaacattttaaataaatcaaaTGAAATAAATGTGTTTGGCTGTCCCAAACAGGAAAGTAAAACAAGAGGTTTCAGTCAACCTAAAAATCGCTGATTTTCACACTGCGCAAATCAACTTCATTGCAATCATTCATTGTGCTTAAATGATATGAAAATTATATTATAGTCCTAGCTAGATTAATCATAGGGACTTGATCATCTCAATGAATTCGACATTGTAAACTATAGTCTTCTTCACCAAAACATAGTTCAAATAGCTGTACAAATTAACAATACCTATACATAGAAAACTCTTAAACAAAGGGCTGAATTCAGTCAAACCTGCCTTAGCCTCAAACATGCCTTAGTAAGTAGAGATACTGCATAAATGAGGCCAACTACCCAGATGCCTAATTACAAAGCTAGGAGCATCTACTTATAAGAGGTGGCTTGCTTGTTCTTttactagcctggtctcagacccgttgtctccttctatagcctggtcccagatctgttgtctccttctatagcctggtcccagatctgttgtctcctcctgtagcctggtcccagatctgttgtctccttctatagcatggtcccagatctgtttgtgctcttgccaactccattgcaAGTCAAATATGACAAGTATTGGCATGACATTGGCCTCAGGCTAGTATTTTACAGTACCAAAAccacattgttattttattgagGGGATAAGGCATTAACACTGGTTTGACTGAATTGGACCCTTAAAAGAATCACTGACAAACTTCTCAGCTGTCATTTGACAGTAAATATAATCACGTTGCATCACATTCAGACCCCCGGGTTCAAATAGTACTTGTTTTCTTGAGGTGGTCGTACAATGGAACCACTGGAACAGATTGAAAAGTACAAGTAAGGAAATAAAGACTACTTGGACCTGGGTCTGGTTACATCTCAAGAGTAACACAAGATGGTAATGACTAACTGGCAAAACTGTTGAAAACAAGACATAGTGCATGATGCCCTTAATAAACTAGTGCTGTGCCAGTGGACTGTACTATCTCAACACAGTTACTGGACGACACCTAACAAATGTACTTTTGCGAAGCACACCTACTTTGGTTTAAATTATGAGCCTTGActatatgtataaaataaatacaatttttaaaaagaAAAATAATTACTACCATTTGTAGCAAAGCGTATGGACCGTTTCTGATATTAAAAGTTCATTCCTACGTTGGTTAGTGTAGTAGGTCAGAACGAAGAATTTTGGGTGGCCAGAATGTGGTCATCGGTGCCTCAAAACACACGACGCCTCTATTTAGTCTGCCATTCGTCTTTATTTCAACGAGGAACTAGTGACACTTTATGACATCCCATCCGCAAATTAAAAATGGCACAGACGGACAGTGGAAGTGCTGATTGTCGAGGTTCACTGGTCTCAAGTCAATTTAGCCTTCTCAGCTGAACTGTCTTGACAATAGATCTGGAAACCAGAGAGGAAAACGGCTATTTtttttagtaaaaaaaataataaaatcagATGAGGCACAAATTACACCCCCATCAGTATAAGACTGACCCCCCCCTATTCATCATTAACCCACTCTGTTGATCCCGACCACTCATACGAGACAATTTCAGACATTATACACAATTAGGAATAGACCCAATTGACGGTCTCTCGGCCCCTCTTCGAAACGGCACAACTATGCTGCCACCGTCTCAGTGAACCAAATGGGTTGGTGGTTTTAGCTACGGTTAACCACTATAGCTTCCGCTCGCCAGCCAAAATGCTGCCGTACAGCGTGTTCGTGAGGGGAACGTAGCTTTTCTCGGAGAAATCCAGGAAATAGAGTGGGCTGCAGATTGTTGAAGGGTTGAATCCGCTCTCCACTAGATTGAATTTCTGCTGCTTGAAGGTTCCCGTCATTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414147 False 2974 lncRNA 0.39 4 8286015 8289236
TU414148 True 2974 lncRNA 0.39 4 8286015 8289236

Neighbor

gene id symbol gene type direction distance location
LOC110523142 LOC106571805 coding downstream 56724 8206491 ~ 8229291 (-)
LOC110524943 fbn2 coding downstream 81497 7882389 ~ 8204518 (-)
LOC110523137 pbx3 coding downstream 563888 7593362 ~ 7722127 (-)
mvb12ba mvb12b coding downstream 849096 7394813 ~ 7436919 (-)
LOC110523135 lmx1b coding downstream 918218 7272318 ~ 7367797 (-)
hint1 hint1 coding upstream 471595 8760831 ~ 8765948 (-)
LOC110524946 LOC106571878 coding upstream 568381 8857617 ~ 8864575 (-)
syk syk coding upstream 855901 9145137 ~ 9199533 (-)
LOC110523157 lyz2 coding upstream 1014408 9303644 ~ 9306869 (-)
LOC118964557 lyz2 coding upstream 1029289 9318525 ~ 9321762 (-)
G364259 NA non-coding downstream 89709 8195821 ~ 8196306 (-)
G364257 NA non-coding downstream 90881 8188808 ~ 8195134 (-)
G364255 NA non-coding downstream 106525 8179261 ~ 8179490 (-)
G364251 NA non-coding downstream 115656 8170041 ~ 8170359 (-)
G364250 NA non-coding downstream 116084 8169719 ~ 8169931 (-)
G364318 NA non-coding upstream 16015 8305251 ~ 8307147 (-)
G364316 NA non-coding upstream 17270 8306506 ~ 8306983 (-)
G364323 NA non-coding upstream 20402 8309638 ~ 8310134 (-)
G364324 NA non-coding upstream 21086 8310322 ~ 8310541 (-)
G364325 NA non-coding upstream 22042 8311278 ~ 8311522 (-)
LOC110524941 LOC106572051 other downstream 1560035 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 1731300 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 2331764 5945164 ~ 5954687 (-)
G361170 NA other downstream 3204147 5080578 ~ 5081868 (-)
G360703 NA other downstream 3546313 4738312 ~ 4739702 (-)
G364322 NA other upstream 14031 8303267 ~ 8304183 (-)
G364754 NA other upstream 758306 9047542 ~ 9099000 (-)
G365752 NA other upstream 900433 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 3844816 12134052 ~ 12136790 (-)
G368921 NA other upstream 4416330 12705566 ~ 12706092 (-)

Expression


Co-expression Network