G364572 (LOC106569275)



Basic Information


Item Value
gene id G364572
gene name LOC106569275
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8745597 ~ 8745819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU414460
TGCCCTCAACACGGATAACTTGTTCCTCAGCAACAGGTGCTTGTGGCTGCTCTACCGCTGTcggcccacctctccctacatcagtgggcccaggcgttacaaGGACTACCTGCGCCCCTCCCTTTGCCTTGTCCCTTTTCGGGCAAGCATGTTGCTTATGGCCaacatccccacactcaaaactCTGTTGACTACCCGTACTAGCATAAGCCATATACAGTCT

Function


NR:

description
PREDICTED: uncharacterized protein LOC106569275

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU414460 True 223 lncRNA 0.54 1 8745597 8745819

Neighbor


gene id symbol gene type direction distance location
LOC110523142 LOC106571805 coding downstream 516306 8206491 ~ 8229291 (-)
LOC110524943 fbn2 coding downstream 541079 7882389 ~ 8204518 (-)
LOC110523137 pbx3 coding downstream 1023470 7593362 ~ 7722127 (-)
mvb12ba mvb12b coding downstream 1308678 7394813 ~ 7436919 (-)
LOC110523135 lmx1b coding downstream 1377800 7272318 ~ 7367797 (-)
hint1 hint1 coding upstream 15012 8760831 ~ 8765948 (-)
LOC110524946 LOC106571878 coding upstream 111798 8857617 ~ 8864575 (-)
syk syk coding upstream 399318 9145137 ~ 9199533 (-)
LOC110523157 lyz2 coding upstream 557825 9303644 ~ 9306869 (-)
LOC118964557 lyz2 coding upstream 572706 9318525 ~ 9321762 (-)
G364559 NA non-coding downstream 19107 8725792 ~ 8726490 (-)
G364555 NA non-coding downstream 24681 8720534 ~ 8720916 (-)
G364552 NA non-coding downstream 31146 8707712 ~ 8714451 (-)
G364534 NA non-coding downstream 67468 8677793 ~ 8678129 (-)
G364532 NA non-coding downstream 72432 8672921 ~ 8673165 (-)
G364643 NA non-coding upstream 99909 8845728 ~ 8900234 (-)
G364645 sptlc1 non-coding upstream 135239 8881058 ~ 8886121 (-)
G364677 NA non-coding upstream 174197 8920016 ~ 8921632 (-)
G364744 NA non-coding upstream 277930 9023749 ~ 9024604 (-)
G364722 NA non-coding upstream 279880 9025699 ~ 9027771 (-)
G364322 NA other downstream 441414 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 2019617 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 2190882 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 2791346 5945164 ~ 5954687 (-)
G361170 NA other downstream 3663729 5080578 ~ 5081868 (-)
G364754 NA other upstream 301723 9047542 ~ 9099000 (-)
G365752 NA other upstream 443850 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 3388233 12134052 ~ 12136790 (-)
G368921 NA other upstream 3959747 12705566 ~ 12706092 (-)
G370333 NA other upstream 5461371 14207190 ~ 14208705 (-)

Expression



Co-expression Network