G364645 (sptlc1)


Basic Information

Item Value
gene id G364645
gene name sptlc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8881058 ~ 8886121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU414538
CTTCAAATGGGGCAGAAGTGTGCGAGTTGCCAGATAGcgaccaacaatgacaagaaacagCCATGTGGGGAACCATTAGTGACTCGGTTCAGCTAGagtcttgttcttgataccatgtcttgttttgactgatttcatgtcaatgctaatatggcaaaaataTTTGCTAGCTAGCGAACCAACAACTTTAACAacgtatttgagagacaagtgctcattgtgcaaatgtatttatgttttcaataaacattgggatGGAGaataaatatagtttacatgttgttacaatgtttatacattgtaaaccaactgtctgttttgccccatagttgtgcataatcagaaatggctaatatcttagaaaataaacaaaaaaggTATGCTTCTACTTAAAATAGTACAGACCTTCACTCGCTCGTTGTCAAGGAAACCCAAGAAGTTAAATGAAGCAAAGTTAATGCACTCTTTTCCATTTACAATGATTTTGTGGCTTGGTGGGCCAGTGACGATGTCATAATTGAGGGAAGGATGGTCTTTGGACATAGGAGGGACAAGGGGTTCTGGTTGCCATTCTTCAATtaagtcctccttttcCTTCTCTGTGAGGTCTGAACGCTCCTGTAGTTTGTACGTCTTTGAAAACAGCAGTCTGATGATCCACAATATGAGGATCCCCTCCAGGACCAGATGGTAGGCAGGTGCCTCGTATAGTGCTTGTACCATCTCCACTAACACCCACTGCTGCCCCGACGCCATCTTGGTTACCTGATCACATGGTCAACGTCATCGTCCGTAAAATGAAGGGTGCGTTCGTAAGTTCACTCTGGTTATCTACTCCAATTAATTAACGAAAACGCAACACCGGTTGAATATAACGGATGTCAGTAAACGTCGcaaaattgttgccagcagcacagttagtcaccaacccAATAGAacacatgaaaacagcctaaccagctctgctaataCAAATCAAATGGTGGTGTTCTCTCATTTGGGGCTGGAAGTAGTTAGCCAACTTTAGACAGTAAATTTGGGTGCTTGACTTCCGTTGTAAGGTCAGAACGCTCGCATCAACCCTAATCATTGGCCATAacatccagtgtgcgctctggaCGGTCCTCTGAATTtgcgaacggacaatctgacaacgctctgaatttaagAACGACCAGACATCCTCTagcactccagagtgaatttacgaacacacccgaaGATGAGCAAGGCCTCTAGCGAATGCGCATATAGGGCTGCGCCCCTTTCCGGGCCATGGCTTGAAAAGGGTTTGCGCTTTTCTCAAATGATCGTCAAAAGTTTAAATCTCCGGGGTGAACTATAATAATTCAAAAGATTAGAAATCGCTTTTAAAAAAACgcttatttatgttttttttttttaaaggcaaagGTACAAAGACTGTACATACCAGAATTAGGGGGCAAACAAACTGCTCATCCCATACAATGGCGCGGCCTGTATCGCCCAATCAGAGAGCAGATTACAAGTGACGTGACCTGTTAGCG

Function

symbol description
sptlc1 Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 1A. Orthologous to human SPTLC1 (serine palmitoyltransferase long chain base subunit 1).

NR:

description
serine palmitoyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414538 True 1529 lncRNA 0.43 4 8881058 8886121

Neighbor

gene id symbol gene type direction distance location
LOC110524946 LOC106571878 coding downstream 16483 8857617 ~ 8864575 (-)
hint1 hint1 coding downstream 115110 8760831 ~ 8765948 (-)
LOC110523142 LOC106571805 coding downstream 651767 8206491 ~ 8229291 (-)
LOC110524943 fbn2 coding downstream 676540 7882389 ~ 8204518 (-)
LOC110523137 pbx3 coding downstream 1158931 7593362 ~ 7722127 (-)
syk syk coding upstream 259016 9145137 ~ 9199533 (-)
LOC110523157 lyz2 coding upstream 417523 9303644 ~ 9306869 (-)
LOC118964557 lyz2 coding upstream 432404 9318525 ~ 9321762 (-)
LOC118964743 LOC106572855 coding upstream 436793 9322914 ~ 9324963 (-)
lyz2 lyz2 coding upstream 444684 9330805 ~ 9333401 (-)
G364572 LOC106569275 non-coding downstream 135239 8745597 ~ 8745819 (-)
G364559 NA non-coding downstream 154568 8725792 ~ 8726490 (-)
G364555 NA non-coding downstream 160142 8720534 ~ 8720916 (-)
G364552 NA non-coding downstream 166607 8707712 ~ 8714451 (-)
G364534 NA non-coding downstream 202929 8677793 ~ 8678129 (-)
G364677 NA non-coding upstream 33895 8920016 ~ 8921632 (-)
G364744 NA non-coding upstream 137628 9023749 ~ 9024604 (-)
G364722 NA non-coding upstream 139578 9025699 ~ 9027771 (-)
G364749 NA non-coding upstream 147788 9033909 ~ 9034111 (-)
G364750 NA non-coding upstream 148308 9034429 ~ 9034652 (-)
G364322 NA other downstream 576875 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 2155078 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 2326343 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 2926807 5945164 ~ 5954687 (-)
G361170 NA other downstream 3799190 5080578 ~ 5081868 (-)
G364754 NA other upstream 161421 9047542 ~ 9099000 (-)
G365752 NA other upstream 303548 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 3247931 12134052 ~ 12136790 (-)
G368921 NA other upstream 3819445 12705566 ~ 12706092 (-)
G370333 NA other upstream 5321069 14207190 ~ 14208705 (-)

Expression


Co-expression Network