G365796


Basic Information

Item Value
gene id G365796
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9353479 ~ 9452406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415830
gctttcacctggattcacctggtcagtctatgtcatggaaagagaaggtgttcttaatgttttgtacactcagtgtacatgtaTATGCCATATCATGCTTTATATGGTTTGGTGTGACTTTCAAATTCTACTATTATGGGTTTAAGCTCTTTTTCATCATGCTTCTCTTTTCCACGCTAACCTCTTTGTGTCATAAGACAAGAAAATAACCTCCAAAAACCATACAAGGAAATATTTTCAAAGTTAGGAACTGCacatccatctcctctgtgtgttctccattgtgtttgtgtcagtgtAGTTTGAGTAAAAGGTTATTGGACCCTTCTAGATGgttcatgggttagggttagtcacctgtctgtcttcactctaaATGGGTTTACAGAAATGGCTTAATctgtatttccattttttttttaaaaggtgtTTAATGTaactatattattatttattttttatatcatTTTTTATTTCTAGTTGTAATTTATCTGAAGTCATGGAAGACATTGATATTGGTTTAATATAAAAATGGCAGTATGTTGCATATAGGCTATGTTTACCTGGAGTGGACACTTAAAGGCACCTTAACCCGACGTATGAACGGTGATGTGTACTTATTTAAGGGTGCAGATCACAACAGCAGCTAAAGATAAAAACTCATTCATTTGAACAAACTGTCCCTGAATAACGGTGATGTTTTCACCAAACACTTGGAAATGTTCTCTGGGGAAATATATTCGGTATTATCAATAACCGTCAACAATTTGCTCACAGATGTGACTGTGTTTGCAGTGAATTTTTGGTGGCTTCTTAGTTGTGATGTTTAGAATGTGTTGATTTAACAGTTTAACCTTAACAGTGTTCGTACCGCATCATATTAATAGTATACAGTAGAAATTAACAGTTTTACTTTGGCCATCATGAAGGAAAACGCTACTTGAACAACACATGTTTTAATATGCCATACAATGCAAGATATTGTAAGACTGTGTCAGTTCTAAACAGGAATATCCAATGCATTATGGGAATTGATAATAGACTACAGTAATTCTGGACTGAGATGCCCGTTTAatagagaatctccattgaacatgGTTTTTAGGCCAGGACTGTTCTGAATCTGTGATCTGGAAACCGGCCCTCGATGTTCACAGTAAAGCATTGTCTTCATGATTACAATGTGGGTTGAAACGTGATATTTTCCTGCATGACCATTAACCACAACAATGGAACAAGGAAGTTGCATCGCAGGTCAACAGTGCTTTTCAGTGACTCATTTTGACTTCATGTTCATAGGCTTGTGTGGAACTTTTGTCATTTTATTCCTACAAAAGGTTTATTGTCATTTTGACTTTCTGGTCAAATCTTTCACGCCGCTTGTATACTGTAGTTTAGCTACCTAAAAGCATTtattttgttttctactgtgtctATTTATGCCCTGCAATGCGACTGACTTACGTTTTATTATCTTACACTTGACATTGTTATTAAAAACACTACTACGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU415830 True 1513 lncRNA 0.36 2 9353479 9452406

Neighbor

gene id symbol gene type direction distance location
lyz2 lyz2 coding downstream 20078 9330805 ~ 9333401 (-)
LOC118964743 LOC106572855 coding downstream 28516 9322914 ~ 9324963 (-)
LOC118964557 lyz2 coding downstream 31717 9318525 ~ 9321762 (-)
LOC110523157 lyz2 coding downstream 46610 9303644 ~ 9306869 (-)
syk syk coding downstream 153946 9145137 ~ 9199533 (-)
pam pam coding upstream 2055 9454461 ~ 9610550 (-)
LOC118964558 NA coding upstream 30718 9483124 ~ 9484809 (-)
LOC118964744 NA coding upstream 171364 9623770 ~ 9624739 (-)
LOC110522838 NA coding upstream 302881 9755287 ~ 9756985 (-)
reep5 reep5 coding upstream 310509 9762915 ~ 9775557 (-)
G365815 NA non-coding downstream 72428 9280801 ~ 9281051 (-)
G365814 NA non-coding downstream 73803 9279446 ~ 9279676 (-)
G365813 NA non-coding downstream 77220 9276052 ~ 9276259 (-)
G365812 NA non-coding downstream 77632 9275621 ~ 9275847 (-)
G365806 NA non-coding downstream 88533 9264743 ~ 9264946 (-)
G365795 NA non-coding upstream 892 9453298 ~ 9453647 (-)
G365918 NA non-coding upstream 117222 9569628 ~ 9570863 (-)
G365923 NA non-coding upstream 126146 9578552 ~ 9578828 (-)
G365972 NA non-coding upstream 217203 9669609 ~ 9670168 (-)
G365980 NA non-coding upstream 240722 9693128 ~ 9693350 (-)
G365752 NA other downstream 163381 9189669 ~ 9190098 (-)
G364754 NA other downstream 302771 9047542 ~ 9099000 (-)
G364322 NA other downstream 1049296 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 2627499 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 2798764 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 2681646 12134052 ~ 12136790 (-)
G368921 NA other upstream 3253160 12705566 ~ 12706092 (-)
G370333 NA other upstream 4754784 14207190 ~ 14208705 (-)
G370635 NA other upstream 4974932 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 5540722 14988147 ~ 14995197 (-)

Expression


Co-expression Network