G365001


Basic Information

Item Value
gene id G365001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9477926 ~ 9481000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU414939
gtcacaccctggtcgaagtattttgtgtttatctttatttatttggtcaggccagggtgtggcatgggtttttgtaggtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtcctgatgtcattgttctttgttaggttacacaagtataggctgtttcggttttcgttaagtttattgttttggtagtgtttgtgtttagtgtgttacttcattaaacatggattgcaatagacacgccgcattttggtccgactctccttcacacctagaaa
>TU414940
gtcacaccctggtcgaagtattttgtgtttatctttatttatttggtcaggccagggtgtggcatgggtttttgtaggtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtcctgatgtcattgttctttgttaggttacacaagtataggctgtttcggttttcgttaagtttattgttttggtagtgtttgtgtttagtgtgttacttcattaaacatggattgcaatagacacgccgcattttggtccgactctccttcacacctagaaa
>TU414941
gtcacaccctggtcgaagtattttgtgtttatctttatttatttggtcaggccagggtgtggcatgggtttttgtaggtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtcctgatgtcattgttctttgttaggttacacaagtataggctgtttcggttttcgttaagtttattgttttggtagtgtttgtgtttagtgtgttacttcattaaacatggattgcaatagacacgccgcattttggtccgactctccttcacacctagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414939 False 406 lncRNA 0.42 2 9477926 9481000
TU414940 False 406 lncRNA 0.42 2 9477926 9481000
TU414941 True 406 lncRNA 0.42 2 9477926 9481000

Neighbor

gene id symbol gene type direction distance location
pdzph1 LOC106571915 coding upstream 174755 9287057 ~ 9303171 (+)
LOC110523155 diras2 coding upstream 274072 9198915 ~ 9203854 (+)
auh auh coding upstream 378924 9048724 ~ 9099002 (+)
nfil3 nfil3 coding upstream 431201 9041049 ~ 9046725 (+)
trnas-uga NA coding upstream 534781 8943072 ~ 8943145 (+)
st8sia4 LOC100135820 coding downstream 178812 9659812 ~ 9677491 (+)
LOC110522837 tmem217 coding downstream 209509 9690509 ~ 9691996 (+)
chd1 chd1 coding downstream 213048 9694048 ~ 9731133 (+)
LOC118964774 NA coding downstream 230751 9711751 ~ 9711969 (+)
LOC118964779 NA coding downstream 244438 9725438 ~ 9725565 (+)
G364932 NA non-coding upstream 22861 9454357 ~ 9455065 (+)
G364934 NA non-coding upstream 23746 9453804 ~ 9454180 (+)
G364935 NA non-coding upstream 24258 9453300 ~ 9453668 (+)
G364943 NA non-coding upstream 30907 9446429 ~ 9447019 (+)
G364941 ppip5k2 non-coding upstream 65959 9386455 ~ 9411967 (+)
G364942 pam non-coding downstream 30683 9511683 ~ 9515139 (+)
G365093 NA non-coding downstream 154188 9635188 ~ 9686962 (+)
G365109 NA non-coding downstream 197974 9678974 ~ 9681569 (+)
G365077 reep5 non-coding downstream 293865 9774865 ~ 9775577 (+)
G365175 NA non-coding downstream 321618 9802618 ~ 9802835 (+)
G364850 NA other upstream 248695 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 631810 8775134 ~ 8849107 (+)
G362662 NA other upstream 1558361 7918922 ~ 7919565 (+)
G362554 NA other upstream 1785412 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 2288107 7185926 ~ 7189819 (+)
G365197 NA other downstream 367703 9848703 ~ 9849154 (+)
G366748 NA other downstream 1495682 10976682 ~ 10977152 (+)
G366973 NA other downstream 1944642 11425642 ~ 11428710 (+)
G367684 NA other downstream 2397329 11878329 ~ 11880035 (+)
G368440 NA other downstream 3627696 13108696 ~ 13109134 (+)

Expression


Co-expression Network