G364942 (pam)


Basic Information

Item Value
gene id G364942
gene name pam
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9511683 ~ 9515139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU414879
caaccatccaggaacagtttggtgatgacaatgccttttccagcatgatggagcacctagACATAAGGCacaagtgataactaagtggctcggggaacaaaacattgttATTTTGGGTCTATGGCCatgaaactccccagaccttaatcccatttaGAACTTGTGGTCAAGACAAagtccaagcattgattatgcaagaatgggctgccctCAGTCAGGATGTTGCCCAGatgttaattgacagcatgccatggcggattgcagaggtcttggaaaaagaagggtcaacactgcaaatattgactctttgcataaacttcatgtaattgtcaataaaagcctttgacacttataaaatgcttgtaattatacttcagtattccatagtaacatctgacaaaaatatctaaagacactgaagcagcaaactttgtggaaattaatatttgtgtcattctcaaaacttttggccacgactgtatatgtaACATCATCATAGCTACTTACTTGACCCCCCATTGGTGGTCTCCCCTGTGGAAGATGACCAGGTTGTCGTCTGAGTCCAGGGCCAAACCGGACACCTGACCCAGCTGGAGTGGGCTCTCTGGCCAGTCCGTCACCTCTTCCAGAtggtactcttcttcatcatcatcatcatcgtcaatCTCGACCAGGGCGTTAGCTGGCATTAGCTTGCTCCCGGGAGGCCTGGCCGTAGCCTCTAACTGGTGAAACTTGTGCACTCTGTCCCTCACCAGTATAGCATCCTCTCTGTCCAGGAAGCCTAGCCTGGGACTGGGCCAGCCCAGGTCCTTCTTTTGAATTATGCTATCAATCTGAGCCACCAGTTTGGCCTGGGCACTCTGCGCCTCGCCGGGCGTATACTTATGCACGTGGACTACGTCCTCGCTCTCGCCTAGGAGTTTGGACAGAAGGGAATAGAAGT

Function

symbol description
pam Enables peptidylglycine monooxygenase activity. Acts upstream of or within ciliary basal body-plasma membrane docking and microvillus assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular region. Is expressed in floor plate; gut; otic vesicle; and ventricular system. Orthologous to human PAM (peptidylglycine alpha-amidating monooxygenase).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU414879 True 946 lncRNA 0.47 2 9511683 9515139

Neighbor

gene id symbol gene type direction distance location
pdzph1 LOC106571915 coding upstream 208512 9287057 ~ 9303171 (+)
LOC110523155 diras2 coding upstream 307829 9198915 ~ 9203854 (+)
auh auh coding upstream 412681 9048724 ~ 9099002 (+)
nfil3 nfil3 coding upstream 464958 9041049 ~ 9046725 (+)
trnas-uga NA coding upstream 568538 8943072 ~ 8943145 (+)
st8sia4 LOC100135820 coding downstream 144673 9659812 ~ 9677491 (+)
LOC110522837 tmem217 coding downstream 175370 9690509 ~ 9691996 (+)
chd1 chd1 coding downstream 178909 9694048 ~ 9731133 (+)
LOC118964774 NA coding downstream 196612 9711751 ~ 9711969 (+)
LOC118964779 NA coding downstream 210299 9725438 ~ 9725565 (+)
G365001 NA non-coding upstream 30683 9477926 ~ 9481000 (+)
G364932 NA non-coding upstream 56618 9454357 ~ 9455065 (+)
G364934 NA non-coding upstream 57503 9453804 ~ 9454180 (+)
G364935 NA non-coding upstream 58015 9453300 ~ 9453668 (+)
G364943 NA non-coding upstream 64664 9446429 ~ 9447019 (+)
G365093 NA non-coding downstream 120049 9635188 ~ 9686962 (+)
G365109 NA non-coding downstream 163835 9678974 ~ 9681569 (+)
G365077 reep5 non-coding downstream 259726 9774865 ~ 9775577 (+)
G365175 NA non-coding downstream 287479 9802618 ~ 9802835 (+)
ca9 LOC106571618 non-coding downstream 313351 9810724 ~ 9834173 (+)
G364850 NA other upstream 282452 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 665567 8775134 ~ 8849107 (+)
G362662 NA other upstream 1592118 7918922 ~ 7919565 (+)
G362554 NA other upstream 1819169 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 2321864 7185926 ~ 7189819 (+)
G365197 NA other downstream 333564 9848703 ~ 9849154 (+)
G366748 NA other downstream 1461543 10976682 ~ 10977152 (+)
G366973 NA other downstream 1910503 11425642 ~ 11428710 (+)
G367684 NA other downstream 2363190 11878329 ~ 11880035 (+)
G368440 NA other downstream 3593557 13108696 ~ 13109134 (+)

Expression


Co-expression Network