G365109


Basic Information

Item Value
gene id G365109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9678974 ~ 9681569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415058
GAGTGGAAACGTACCTTGAGTTAGGCCTTTTTAGACAATTGTTATTCATTTGTATGCATTATTGGACTgtatacaacaggtgggtctaatcctgaatgctgattgattGAAACCGCATTCCAGTCGGTGTCTTTTCCACAAATTatcaccggctaaatctatgacgttaaaatgcctatttattctgttccatctgactgcgcaatccactgtctcatcagcccagccaggcaatttataaccttgatctccactataaaaagcatctagacattgtCTCACATTTCTtgtagactaacatttagttttcaacaaaGGCAATTTGTATAAACCTCGCTGTCTGTGTCttcgacatttgcaacattgtttcagtaTTCatattcgatctccagctgtccaaaagtaatgaacgtgtcgggagtcgATTCAAGAAagacaggcagcgtttctcagccagtcgataTCTTGAATAAGCTGGCATAATTTTCATGGAtttatatacaaagaaatgtaaattgaaaaaaggtcaaacgaaaggaagtgcagctagtttgcagtctttccagcttcagtttgaagtgattgtgttagctgtgttgttggctagctcctctgaacaacagtgtcctgacaagtgagcacattttctgtgccaggtgaaatcgcgcctcatttgctcattgttatggatgtatccaaataaatgtcactagaaaacagttaAACAAATGCAATTGctgctactttgctgttattctggctgcactgtttgacgtgactgtaagttagccgtagttggctagctagcaagcaagggataagaacattaccagccagtatggcaatggaacatttagaacgattGTCCATAGATagagaacaaaaagactgaacgactgggtcgcgtctctggcaaccgataGAACGAACAACCAGCCGGCCTGGGTAGCAacccctagatttgtgtcgggactatttCTTGTaaaaggatgaaatagtatgaataaatcaatcaaaataatgtttttaatgaaaatatgttaaatcattatttgaatatgttggtaacctgttgtataaaagtgataatgccctccaaacactggcttctctgACATTATCACTTAAGCAAAGTATTGCACCTTGGTGGATTGTGAGGTTACAATGCGGTGGCTGAGCCTCTACAGAGGACCCCCGGGGGAGTATAAATAGCCACTGACTGATTCATCTGATCCAGTTCATTAAACGTTACCATTCCCCTTTAAACAGCTGAATGTAAACACAGCCTAATACCATTGGAATTAATTGGTCTATGTAGCCACTGCAAATCTAAAAATGTATAAGAAAAAAAGATGACAGGAAAGATGTGGAGGTATGGAATGTTATGTTACACTATGAATTATTCATTAGCAATCAGATCTTTCTGTGATTGTTCTTAGTAACAGGATTGTTCTTAGTAACAGGATTCAACATCAGTCTGTTTCACTGTTGAATCTCTTTCATATCTCACACAGAAGTACCTCTTAGATATTTGATATATTTGAACTGCTGCATGCTCATGCTATCCTGTACTAACTTCAACTTCCTGTATTTACATAATGTCAAGACACCCTACCCTTTTTCAGTTTCTTTAATAGGCTTGAATGTAAATGCATTTATCTCACAATATGGATGATGTCATGCAACTGCTAACGAATGTTCAAAAATATCTGCCTCGAGGAGACATTGTATGCTCAAGGAATTCTTAATTACATTTTCTTTACATACCAATttaattttttagttttttttagttttttactCTCAGTATTAAGAAAGTCCAGTTGCTTACAGCTAAAAGATTGTATGTATCTAAGGGGCCTATATATGAAAGTCTGGGACCGTGTTCATAAATCTTCCCACAGAAGTCGTGCTAGTCTGGgaccaaactgatcctagatcagcactcctactctgagctGCTTTATGAATAGAGGCCCTGGACACCAGTGGAGACTGGAGCCCATCCTCCTAACTtctccttccaccagcctccactgtaaGACACCAACTTCTGGTATATGGTGGCATAAATTATGTAAAATGTCCAAAAAAACGTTGCTTTGTAATGAATAATACTGATGTAATTGGGTTTGTGGCAGGTCATTTGTAAATGATCCACTGTCAATGACGACCTAGATAGAATATGGAAATGTACATACATGGTAACATTGAATAAGGAGAACAATGAATGTTAATTAATATATGGTAGGCTAACCATTATAACGAGACATAAGGTTGAATAACTTTTTTCAATACTGCCACAAGCCTTTGAAATGACTGAAATTGTTATGTCTCGTTTGCTTTGTTACACCATGTGTCTGTTTTTGACCGTTCATAACTCTGTAATTTATACAATTCTTGTTTGATGTTCAATATGTAACACCTGTAGTTTGAGTCAATCCGATCAGGTGCTGAATGTCGTGGTAGATTTTCATCCTTTTTTGGTAAAATTTGATACCATTTTGTTTTACAGCTTCTTTTTTTAT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU415058 True 2528 lncRNA 0.38 2 9678974 9681569

Neighbor

gene id symbol gene type direction distance location
st8sia4 LOC100135820 coding upstream 1483 9659812 ~ 9677491 (+)
pdzph1 LOC106571915 coding upstream 375803 9287057 ~ 9303171 (+)
LOC110523155 diras2 coding upstream 475120 9198915 ~ 9203854 (+)
auh auh coding upstream 579972 9048724 ~ 9099002 (+)
nfil3 nfil3 coding upstream 632249 9041049 ~ 9046725 (+)
LOC110522837 tmem217 coding downstream 8940 9690509 ~ 9691996 (+)
chd1 chd1 coding downstream 12479 9694048 ~ 9731133 (+)
LOC118964774 NA coding downstream 30182 9711751 ~ 9711969 (+)
LOC118964779 NA coding downstream 43869 9725438 ~ 9725565 (+)
dcp2 dcp2 coding downstream 100886 9782455 ~ 9797823 (+)
G364942 pam non-coding upstream 163835 9511683 ~ 9515139 (+)
G365001 NA non-coding upstream 197974 9477926 ~ 9481000 (+)
G364932 NA non-coding upstream 223909 9454357 ~ 9455065 (+)
G364934 NA non-coding upstream 224794 9453804 ~ 9454180 (+)
G364935 NA non-coding upstream 225306 9453300 ~ 9453668 (+)
G365077 reep5 non-coding downstream 93296 9774865 ~ 9775577 (+)
G365175 NA non-coding downstream 121049 9802618 ~ 9802835 (+)
ca9 LOC106571618 non-coding downstream 146921 9810724 ~ 9834173 (+)
G365190 NA non-coding downstream 159006 9840575 ~ 9840959 (+)
G365194 NA non-coding downstream 164623 9846192 ~ 9846403 (+)
G364850 NA other upstream 449743 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 832858 8775134 ~ 8849107 (+)
G362662 NA other upstream 1759409 7918922 ~ 7919565 (+)
G362554 NA other upstream 1986460 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 2489155 7185926 ~ 7189819 (+)
G365197 NA other downstream 167134 9848703 ~ 9849154 (+)
G366748 NA other downstream 1295113 10976682 ~ 10977152 (+)
G366973 NA other downstream 1744073 11425642 ~ 11428710 (+)
G367684 NA other downstream 2196760 11878329 ~ 11880035 (+)
G368440 NA other downstream 3427127 13108696 ~ 13109134 (+)

Expression


Co-expression Network