G365077 (reep5)


Basic Information

Item Value
gene id G365077
gene name reep5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9774865 ~ 9775577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415025
TTTAATATTTGGTTTGCTAAATGACCAATTtatgagaagaagaaaaagactTACGATATGTAGGCTGGATAAACAAATCCGATGAGGTTGCACAGTAGGGAGGCTCCATACCCAATAACCAGGTAAATTGCGAGAATGACGACACCGATTGCGATATAGGCCCTGTTTACTCCAGTTTTAGCTTCTATCTTTGCCAATGCATCGGTCATGAAATTCTTTTCATGAAGAAACTTGTCGAATCTCTCTTTTATGTCCTGTACCATTGCTGCCATGATTTTCGTGTTGTATGGTGCTGGTTGGCTATTGAACTGCGACACCCATGCAACTCTATCCTGCTTCTTCTCGCTGTTCAGAGTAAATGAATGGAAGCACGGCC

Function

symbol description
reep5 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gonad; hatching gland; nervous system; polster; and trigeminal placode. Orthologous to human REEP5 (receptor accessory protein 5).

NR:

description
receptor expression-enhancing protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU415025 True 376 lncRNA 0.42 2 9774865 9775577

Neighbor

gene id symbol gene type direction distance location
chd1 chd1 coding upstream 43732 9694048 ~ 9731133 (+)
LOC118964779 NA coding upstream 49300 9725438 ~ 9725565 (+)
LOC118964774 NA coding upstream 62896 9711751 ~ 9711969 (+)
LOC110522837 tmem217 coding upstream 82869 9690509 ~ 9691996 (+)
st8sia4 LOC100135820 coding upstream 97374 9659812 ~ 9677491 (+)
dcp2 dcp2 coding downstream 6878 9782455 ~ 9797823 (+)
ca9 LOC106571618 coding downstream 35147 9810724 ~ 9834173 (+)
LOC110523166 LOC106571594 coding downstream 95050 9870627 ~ 9874229 (+)
LOC110523169 NA coding downstream 333295 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 487128 10262705 ~ 10281350 (+)
G365093 NA non-coding upstream 87903 9635188 ~ 9686962 (+)
G365109 NA non-coding upstream 93296 9678974 ~ 9681569 (+)
G364942 pam non-coding upstream 259726 9511683 ~ 9515139 (+)
G365001 NA non-coding upstream 293865 9477926 ~ 9481000 (+)
G364932 NA non-coding upstream 319800 9454357 ~ 9455065 (+)
G365175 NA non-coding downstream 27041 9802618 ~ 9802835 (+)
G365190 NA non-coding downstream 64998 9840575 ~ 9840959 (+)
G365194 NA non-coding downstream 70615 9846192 ~ 9846403 (+)
G365195 NA non-coding downstream 71297 9846874 ~ 9847079 (+)
G364850 NA other upstream 545634 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 928749 8775134 ~ 8849107 (+)
G362662 NA other upstream 1855300 7918922 ~ 7919565 (+)
G362554 NA other upstream 2082351 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 2585046 7185926 ~ 7189819 (+)
G365197 NA other downstream 73126 9848703 ~ 9849154 (+)
G366748 NA other downstream 1201105 10976682 ~ 10977152 (+)
G366973 NA other downstream 1650065 11425642 ~ 11428710 (+)
G367684 NA other downstream 2102752 11878329 ~ 11880035 (+)
G368440 NA other downstream 3333119 13108696 ~ 13109134 (+)

Expression


Co-expression Network