G365199


Basic Information

Item Value
gene id G365199
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9879262 ~ 9881261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415160
ATTTTGCTGGCCATTTTTAATCATCTTAAGAGCTTATACAGTTGATTCATTGCATAGGATACATACATGAGTAATAAACCTTAATACAATTATTTTAATACCTCCAGAATATTGAATAATTCCATCCAATTAAAACCTTCAGACCGATAAGCATTCTGACTAGACTGAAGTATTGACACAGGTGCATTAAGATATTACATGAGCTTGAAATCAACCAAACAAGTTAACAGCTGTAGGGTAGTTCCACAAAATGAGTCCCTTTGATATTTGAAGTAGAAATGTTGCACCAATATTGGATTTTAAAAGCCTGccatattaaatgaagtgccatTTAATATAGACATGGACAATTCAATacatgatatttttttttaaatatatcaaTAAAAGAGTTAGTGCCAacattcagcattttgacatgtccctctgcAATCAGACTTCTCAGATTTGAACTCACTTAACCTCAAAAGTAAATTTGGCTGTTTTGACAATGTCAATTTGGAAGATTATCTATTTCATGTGATTTGTGAGTCATTGCAAGGTAACACTTAAAcatgtccctcattttaaggtcaatcCTGTAACCTGAACTGAACTTTTGTTTTAATATGGCAAATATTTAATATCCCCCACCCAAAAAAGAAAAATTTAACATCTAATAATCAAATCAGTGTAAAAAGCaagtgagctggttctactctttctGGCCATTTTGTGGTGTTTTGTGGGGGGAAACATTGGGTTGAGCACAGGGCCAGCCCTGGTTGAGCAAGTAGTTACACTACTCAAAAAGAGACTCGTTTCGTGGAACAACCATGTAACAGTTAAACCCGGACAATTATTGAGAGGGTGTTTCAAAAAATTAAGAGATGTTTCAGATTCTAACAACTATGGGCATTCTCAAATCTTTGTCaaggaaaaaaaaaaaggcaAGTGATTAGAATACATGAGGTACCACATCATCATGATTAGAATACATGAGGTACCACATCATCATGATTAGAATACCAAAATCTCTAATATTAAAGACTACTTTCCAAACCCCCAAAAGGTCACTACAACAATTTAGAAAATTCAAAAACTTTGTCAAAAGAATCCTGTGGCGAAATTAAATGTCCCTATTGTATTTAGTTTGTATTACATTATTTGATACCTTTGCTAGTCATTTTGAACCATAGAAAACTAACCTAGACGTAGATTTAACAAACTGCTATCCTAAATAGTCCAAATATTAAAATGTGAACGCTAGTCTTTTTCCCTGTTTGGGTCAGTTCTACTCAAATACTATACTCTATTAATTAAAACAATGAGTGGCACATCTTACCAAACAGTACGTAAAGAATATGTTTACCATTTATTTGTTTTGAAGGTTTACAAAAACTTTATATtttggattaaaaaaaataagagtTTGAGGTAACAGAGCTTAAAGAGTAAAGCAAATGCAATTTCACTTCAAGGAGGCCTCAGAGGTCAGATTAGAAAAGAGATGTCAACTTTAAGACTTGAATCACATGCTAAATACAAACAGCAACCTCGATAGCATTCAACTCTATGCTGTTCTGCTGTTATACTGAACCATGTTAACTTCTGTAGCCAGCATGCGTTTGCCATTAACTAGCATGTGTGCAAGAGACCCTCATTAACTAAACGGAATGCCTTGTTCGTAAGCCTTTACTACTATTAAAGCCAAGTGAAGACTGTCCTGTTCCCAAAGGGGCAAGTCAACTAAAGGATTTGGTCAAGTGTGTATCAATGAGCATTATGAAAGCTTTGTGTTTTAGGCCTCTTGTTCATGGGCCACGACAGACAGAGCTCTCTTTATAGATTGTTGAGCTCCaggagggtttggtccagcgtTTGGTGCATGTCTAGGTTCTCTTCTTTAGCCGTAGCCAGTTTCTCTGAAGACGGGAAAACACAAAGAACAGGTGAGCACCCCAACAAGCTCTGTTGGCTCAGGAATAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU415160 True 1969 lncRNA 0.36 2 9879262 9881261

Neighbor

gene id symbol gene type direction distance location
LOC110523166 LOC106571594 coding upstream 5033 9870627 ~ 9874229 (+)
ca9 LOC106571618 coding upstream 45089 9810724 ~ 9834173 (+)
dcp2 dcp2 coding upstream 81439 9782455 ~ 9797823 (+)
LOC118964779 NA coding upstream 153697 9725438 ~ 9725565 (+)
LOC118964774 NA coding upstream 167293 9711751 ~ 9711969 (+)
LOC110523169 NA coding downstream 227611 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 381444 10262705 ~ 10281350 (+)
gp130 gp130 coding downstream 401739 10283000 ~ 10300246 (+)
slc38a9 slc38a9 coding downstream 459971 10341232 ~ 10366701 (+)
LOC110523175 LOC106571461 coding downstream 520834 10402095 ~ 10420627 (+)
G365223 NA non-coding upstream 495 9878531 ~ 9878767 (+)
G365218 NA non-coding upstream 8103 9870868 ~ 9871159 (+)
G365205 NA non-coding upstream 21142 9854746 ~ 9858120 (+)
G365202 NA non-coding upstream 27910 9851143 ~ 9851352 (+)
G365196 NA non-coding upstream 30970 9848080 ~ 9848292 (+)
G365198 NA non-coding downstream 4053 9885314 ~ 9911145 (+)
G365233 NA non-coding downstream 30124 9911385 ~ 9911700 (+)
G365235 NA non-coding downstream 30760 9912021 ~ 9913862 (+)
G365234 NA non-coding downstream 187638 10068899 ~ 10591997 (+)
G365304 NA non-coding downstream 222727 10103988 ~ 10156606 (+)
G365197 NA other upstream 30108 9848703 ~ 9849154 (+)
G364850 NA other upstream 650031 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 1033146 8775134 ~ 8849107 (+)
G362662 NA other upstream 1959697 7918922 ~ 7919565 (+)
G362554 NA other upstream 2186748 7690440 ~ 7692514 (+)
G366748 NA other downstream 1095421 10976682 ~ 10977152 (+)
G366973 NA other downstream 1544381 11425642 ~ 11428710 (+)
G367684 NA other downstream 1997068 11878329 ~ 11880035 (+)
G368440 NA other downstream 3227435 13108696 ~ 13109134 (+)
G369763 NA other downstream 3883986 13765247 ~ 13769296 (+)

Expression


Co-expression Network