G365198


Basic Information

Item Value
gene id G365198
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9885314 ~ 9911145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415153
AGCGGTTTCAGGACATTTATTACAGAGAAAGGGAAAACAGGGGACAAGTATATATCTCAATACAGAAGACCAAACCTAACCCAGATCTTTGGAGAGGTATGGACACTGTGCCAGACAACACGACTGGGTGTGGGTTTTCCTATATACATCTATAGAAATGTAAGAGGATCACTGAACAATGCTGACACCTGACACAACAGTAGGGAGCGGAACTAAAAGGGGGAATGGGTTTgacgggggtggggggggggcaatctGCCTGGGGCCACATTTATATCCCTTGGTATTTTGAATCGGCAAGTCTTGTAAACTTAGATACGACCACATTTTTTTTCAAATTCGCCATACAAATTTCGGAACCAAGGGTATTGAGAGATAGATCACAGTTCTGTCTGAAAAGTTGTGGAATGAAAAAAAGGACAGAAAGGAAGTGAAGGAAGTCTGAACCCCAGGGGTGCCAGATGAAGGTGGAGagtgtcagaggaggaggaggaggaagagtgaggGAGTGTCTAGAGAGTAGTCATGTCGTTGAGAGCCAGGTCAAGCTCCTCACTGAGGGCTTTACCCTTCAGCTTCTGAGCGTACACCTCgtcTCCAAATCATCAATGGTTTTCTCCAGCTTAGCCACAGACCTCTCTGCAAACTCAGCACGGGTCTCAGCCTGGGGGTGGGGGAAGCATCTGAGCACAATGCTTTTCAAATAAATTTTTTCCAAGCACCAAATGACATACGTAATATCTTGGTTAACATTAGGTTGCATAAGAGTGGGAGGAAGATAAGAGGCTTTAAGATACCATTTGAACAACCATTCATACTAAAATATTAGATATGGTGACCCTACAGTACCCACCTCTTTAAGCTTGTCGGTAAGAACTTTGATTTCCTCTTCATATTTGTCCTCCTTTTGTGAGTACTAGAAGTGAAATAATGGGGATTCATATTAGCACAAGAGCTATGACGAGAGCTTCTCCTTAAACATTCACAACTTAAAATATATGGCAGTATTCTAGTTGAAATATAGACAGTCAATATACATTTATGTATTTATTCTATGACAACGTCTACAGTGTAGCATTCAATTAATAGCCTACTGTTCACATCCACTAAAGTAAACGCTATTGGATAAAGATTCCATTAATGAAAATGAGGAGGGCTACAACAAGAGCTGAGCTGACAGGTTGGCTAGGGAAAGAAGACTAACGACACAAGAGCTGAAAGGTTggctagggaggagaggagactgcaACACGAGAGCTGAAAGGTTGGCTAGGGAGAGGAGGGCTAAAACGCAAGAGCTGAAAGGTTGGCTAGGAAAACAAAGCTAAGAGGGCTAGCTAAAGTCTCAGCGTAGGCTTGTCATAATGCAAGCGGGTCCTAAGAACAAACCATCAAACTCTCCTCAATCATAATCTTCTGCTTTCGAATGTATTTTACACCCATCTAACGTAATGCCTGGACTACAGTTCAATTCCTACACTTTTTAAAATCAATGTTATGGATTTAAAAAAGTATATAGATAACTTTATAGATGCTGCACTGCTTGAGAGGATGGCTTGTGTGTAACTATTTAATTTGACACTATGCTGTATTctgtgcatatgacaaataaacatGGATTATAGCTAGATATCCTACACTAAGACTGTGTGTTGAGGggcatctgtgtgtgttttatccaGCTGGACTATCCTGCATCGTATCTGACCTTCGGGCCCAGCTTACTTCCCCTCTCCTACAGTACCTTCTCAGCCTGGGCCTCCAGAGACTTCAAGTTGTTGGTGACATTTTTCAACTCTTCCTCAAGATCACCAGATTTACTGTGCAacagcaggagggagggaggaaaatgagggaaaagaaaggagagagagagcgttttgagagggaggagaggacacgaCCAAGGAGACCCTGGTCTGGATACTCCAACCCAGTGCCTATTAGGGAGAGTGCGTTGGCTGGATAATAAAACCTACCTGAAGGGGTTAATGACACACTTACCTGAAGGGGTTAATGTCACCTACCCATCAGATGGGAGGGTTAAATCAGGATCCTTGATGGATAATATCTGATAGATAAAATCATATACTCTAAGTATAGGAAATATACAAACACATGTATAAAATCCATACTTGTATAATCTGTATGCCTCAATCTCAAGTATCACATCAAGGATCCCATTGGCTTCAGGTTGAAGATATGGCAAGGGACAGTATGGCTTGTAGGACATTGGTCCTTTTGTACCACAGCAATACTGTCACGTCAACCACCAGGGGAGGCCTCCATGGAGCACAGCTGCTAGGCAGAGAGGCTTGGAGGGACGAGTCAAGGGCATAAGCcagaggagcggaggagaggagcggaggagaggagaaaggaagcaGGTAGTAAAGCAGTTTGGAACCGGGACGtttgtcctggtatgggggggggggggggggggcagacagtaCCTCATCCTCTCCGCACATCATGGACTTCAAATTCTGGTCCATGAGTCTAAGCTCTTCCTCCAGCTCCCTGACTCGACTGGGTTAGTCCACAGTCAGGTAGGTAGAGCGGGGTGTAGGAAGTGGGGGCAGGAGGGGTCAGGGAACCCACACACACAAGGTGATCCCAGGTGGaggggtgttggtggtgttgGATTCAGGCATGCATTACATAAAACACaggggagagaacacacacatccaGGTGCCTGTTGTGGTTAGTGTATCCCATCGTCTCGTCTCCCACGTGGGTTAGTTTCCCAcatattcttttttttatttttattttttctccccaattgttagtagctactatcttgtctcatcgctacaactcc
>TU415159
AGCGGTTTCAGGACATTTATTACAGAGAAAGGGAAAACAGGGGACAAGTATATATCTCAATACAGAAGACCAAACCTAACCCAGATCTTTGGAGAGGTATGGACACTGTGCCAGACAACACGACTGGGTGTGGGTTTTCCTATATACATCTATAGAAATGTAAGAGGATCACTGAACAATGCTGACACCTGACACAACAGTAGGGAGCGGAACTAAAAGGGGGAATGGGTTTgacgggggtggggggggggcaatctGCCTGGGGCCACATTTATATCCCTTGGTATTTTGAATCGGCAAGTCTTGTAAACTTAGATACGACCACATTTTTTTTCAAATTCGCCATACAAATTTCGGAACCAAGGGTATTGAGAGATAGATCACAGTTCTGTCTGAAAAGTTGTGGAATGAAAAAAAGGACAGAAAGGAAGTGAAGGAAGTCTGAACCCCAGGGGTGCCAGATGAAGGTGGAGagtgtcagaggaggaggaggaggaagagtgaggGAGTGTCTAGAGAGTAGTCATGTCGTTGAGAGCCAGGTCAAGCTCCTCACTGAGGGCTTTACCCTTCAGCTTCTGAGCGTACACCTCgtcTCCAAATCATCAATGGTTTTCTCCAGCTTAGCCACAGACCTCTCTGCAAACTCAGCACGGGTCTCAGCCTTTTAAGCTTGTCGGTAAGAACTTTGATTTCCTCTTCATATTTGTCCTCCTTTTGTGAGTACTTCTCAGCCTGCTCCAGCTTCTCCTGGGCATCCTTCAGTGACTCTGAGTATTTATCCAACTCATCCTCCACTCCCTTCAGCTTCTTCTGCAGGGCCAGCAACTCTTCTTCCAgCTGTTTGCATTTGTCCTCTGCCCCCTTTTTGTCTCCTTCTGCTTGCTCTGCCCGATCAATAGCATTCTCCTTATCCAGTTTCAACATTTGCATTTTCTTCTTGATGGCTTCCATGGTTActgttgttttctctctcctaATAACAGGCGAAAAGGGTTCAGAGTTGGTTCTCTCGACGGACGCGCACGAGCcacacagaggacagaggactgaAGTTCACAGAAGCAGCACCTCGAGCCGAGTGATGAGACAAAGCTAGTCTGGATTAGGtaagggaggatgggaggatgtaATTCTG
>TU415158
ATTATTCTTCAGAGCTAAAGACTCAGAATCTACACATTTGTCTATCTGGCACAATCATACGGAATGCCCATCGTTGATTTCAACTGCAATCTGTTCTAATCAGATCCCTGGACAACAGAGCCAGGTTAATGGGGGTTAATCTACCAATTCATTGGTTAATCTATTAAACCCATATTAAAAAAATCCATTCACGTCGGCGCTCCTCTGTTTCTAACGGTACTCAAAGTTGGAAGGTAAATTGTAAATGACTATCTACAATGCTGCTCAACTATTAAGAGTCTTTATTAATGATTGAAACATACAGGTATGTTACCTAATGCTATAATACACTACTAACAAGTCATGCGAGGGTACCCAACAGGCTTCAGTGTTACAACTCATGGTTATAGGGGCAAACCTTTCTGTTAGTGAAACGTCTGTGACGCTATCACAAAGGAAACATAAGAGTGAGTCCAAATGGCACAGGGCATAGGGCGCTGGTCAAAcgaagtgcactatacagggattagggtgccaaattagggtgccatttgggattcaggtAAAGTGAATGGGTCACTGAAAATGCAGTTAGTGACGTCAGCTCCTGGGAACTCCAAGAGGTGTTAATGGTTGTGAATGAAAGGAGCGTTGAAAACGTACCTTCCAAATCATCAATGGTTTTCTCCAGCTTAGCCACAGACCTCTCTGCAAACTCAGCACGGGTCTCAGCCTTTTAAGCTTGTCGGTAAGAACTTTGATTTCCTCTTCATATTTGTCCTCCTTTTGTGAGTACTAGAAGTGAAATAATGGGGATTCATATTAGCACAAGAGCTATGACGAGAGCTTCTCCTTAAACATTCACAACTTAAAATATATGGCAGTATTCTAGTTGAAATATAGACAGTCAATATACATTTATGTATTTATTCTATGACAACGTCTACAGTGTAGCATTCAATTAATAGCCTACTGTTCACATCCACTAAAGTAAACGCTATTGGATAAAGATTCCATTAATGAAAATGAGGAGGGCTACAACAAGAGCTGAGCTGACAGGTTGGCTAGGGAAAGAAGACTAACGACACAAGAGCTGAAAGGTTGGCTAGGGAGAAGAGGAGACTACGACACAAGAGCTGAAAGGTTggctagggaggagaggagactgcaACACGAGAGCTGAAAGGTTGGCTAGGGAGAGGAGGGCTAAAACGCAAGAGCTGAAAGGTTGGCTAGGAAAACAAAGCTAAGAGGGCTAGCTAAAGTCTCAGCGTAGGCTTGTCATAATGCAAGCGGGTCCTAAGAACAAACCATCAAACTCTCCTCAATCATAATCTTCTGCTTTCGAATGTATTTTACACCCATCTAACGTAATGCCTGGACTACAGTTCAATTCCTACACTTTTTAAAATCAATGTTATGGATTTAAAAAAGTATATAGATAACTTTATAGATGCTGCACTGCTTGAGAGGATGGCTTGTGTGTAACTATTTAATTTGACACTATGCTGTATTctgtgcatatgacaaataaacatGGATTATAGCTAGATATCCTACACTAAGACTGTGTGTTGAGGggcatctgtgtgtgttttatccaGCTGGACTATCCTGCATCGTATCTGACCTTCGGGCCCAGCTTACTTCCCCTCTCCTACAGTACCTTCTCAGCCTGGGCCTCCAGAGACTTCAAGTTGTTGGTGACATTTTTCAACTCTTCCTCAAGATCACCAGATTTACTGTGCAacagcaggagggagggaggaaaatgagggaaaagaaaggagagagagagcgttttgagagggaggagaggacacgaCCAAGGAGACCCTGGTCTGGATACTCCAACCCAGTGCCTATTAGGGAGAGTGCGTTGGCTGGATAATAAAACCTACCTGAAGGGGTTAATGACACACTTACCTGAAGGGGTTAATGTCACCTACCCATCAGATGGGAGGGTTAAATCAGGATCCTTGATGGATAATATCTGATAGATAAAATCATATACTCTAAGTATAGGAAATATACAAACACATGTATAAAATCCATACTTGTATAATCTGTATGCCTCAATCTCAAGTATCACATCAAGGATCCCATTGGCTTCAGGTTGAAGATATGGCAAGGGACAGTATGGCTTGTAGGACATTGGTCCTTTTGTACCACAGCAATACTGTCACGTCAACCACCAGGGGAGGCCTCCATGGAGCACAGCTGCTAGGCAGAGAGGCTTGGAGGGACGAGTCAAGGGCATAAGCcagaggagcggaggagaggagcggaggagaggagaaaggaagcaGGTAGTAAAGCAGTTTGGAACCGGGACGtttgtcctggtatgggggggggggggggggggcagacagtaCCTCATCCTCTCCGCACATCATGGACTTCAAATTCTGGTCCATGAGTCTAAGCTCTTCCTCCAGCTCCCTGACTCGACTGGGTTAGTCCACAGTCAGGTAGGTAGAGCGGGGTGTAGGAAGTGGGGGCAGGAGGGGTCAGGGAACCCACACACACAAGGTGATCCCAGGTGGaggggtgttggtggtgttgGATTCAGGCATGCATTACATAAAACACaggggagagaacacacacatccaGGTGCCTGTTGTGGTTAGTGTATCCCATCGTCTCGTCTCCCACGTGGGTTAGTTTCCCAcatattcttttttttatttttattttttctccccaattgttagtagctactatcttgtctcatcgctacaactcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU415153 False 2830 lncRNA 0.45 4 9885314 9891393
TU415159 False 1138 lncRNA 0.47 6 9885314 9911145
TU415158 True 2731 lncRNA 0.44 2 9888473 9891393

Neighbor

gene id symbol gene type direction distance location
LOC110523166 LOC106571594 coding upstream 11085 9870627 ~ 9874229 (+)
ca9 LOC106571618 coding upstream 51141 9810724 ~ 9834173 (+)
dcp2 dcp2 coding upstream 87491 9782455 ~ 9797823 (+)
LOC118964779 NA coding upstream 159749 9725438 ~ 9725565 (+)
LOC118964774 NA coding upstream 173345 9711751 ~ 9711969 (+)
LOC110523169 NA coding downstream 197727 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 351560 10262705 ~ 10281350 (+)
gp130 gp130 coding downstream 371855 10283000 ~ 10300246 (+)
slc38a9 slc38a9 coding downstream 430087 10341232 ~ 10366701 (+)
LOC110523175 LOC106571461 coding downstream 490950 10402095 ~ 10420627 (+)
G365199 NA non-coding upstream 4053 9879262 ~ 9881261 (+)
G365223 NA non-coding upstream 6547 9878531 ~ 9878767 (+)
G365218 NA non-coding upstream 14155 9870868 ~ 9871159 (+)
G365205 NA non-coding upstream 27194 9854746 ~ 9858120 (+)
G365202 NA non-coding upstream 33962 9851143 ~ 9851352 (+)
G365233 NA non-coding downstream 240 9911385 ~ 9911700 (+)
G365235 NA non-coding downstream 876 9912021 ~ 9913862 (+)
G365234 NA non-coding downstream 157754 10068899 ~ 10591997 (+)
G365304 NA non-coding downstream 192843 10103988 ~ 10156606 (+)
G365197 NA other upstream 36160 9848703 ~ 9849154 (+)
G364850 NA other upstream 656083 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 1039198 8775134 ~ 8849107 (+)
G362662 NA other upstream 1965749 7918922 ~ 7919565 (+)
G362554 NA other upstream 2192800 7690440 ~ 7692514 (+)
G366748 NA other downstream 1065537 10976682 ~ 10977152 (+)
G366973 NA other downstream 1514497 11425642 ~ 11428710 (+)
G367684 NA other downstream 1967184 11878329 ~ 11880035 (+)
G368440 NA other downstream 3197551 13108696 ~ 13109134 (+)
G369763 NA other downstream 3854102 13765247 ~ 13769296 (+)

Expression


Co-expression Network