G365235


Basic Information

Item Value
gene id G365235
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9912021 ~ 9913862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415210
AGGGAAAACCAGCTTTATTGACCATAAATCTCTTTTACAATACTATTGAGATGGTGATCCCATAGCACTGTTAATACATGTATATAGTATCAAAATCAGAAAGGTCAACAAAACAATtagaaaatgaaaagaaaaaaaaaaacactcaagtTAGGCTTTCCCTATGTTTGTCATCAACACATAGGCAACTTAACAGTTGTTTTCTATCCAACTATTTTGATTAAGAGAAAAGAGAAAACAAATGTTTGTATAAGAGTGGATTTATATGATGTGTTAAGTTAAACAAATGGATAAGTGCACTTGAAGATGGGAAAATGTTAACAGTtaaatacaattatttgtaaAATACATATAGCAGGCACTTTTTGACTCAATGATATGTTGAAAGAACGTTAGGTTACAAGGAGGCCTCTGACAATGTGAAATAGGCTGGCAATTCAGGGTACATGGTGGTTAATAACAACATTGGACACATTATCCTTTGCATACAATGGCCATCATAGGATTGTACTGCGACAAGAGAAATTACCCCAAAAATACATATCTAAATTTGTTTCTAAAGATCTACTGGTTACAGTTGGCTATTAGATGCATATTACACAGTCAACATCTGATAAAGATTTTAACCACTCAATAGCATCCGAAGGAACAGCCATTCATGATTCAAAACAATGTCCTGAAGAAAGCAAAGTATGGCTTTATGAGCTTCAAACACAGTTAATATCAGGTCCAAAAGTTCATATGATGACACAAACAAATACTCACATATACTTTATTAACATATAAATGTAATAGAAGATACCATTTGTAACACATTTCATAGCATTATttctcttaaaaaaaaaagaaaaaaaaaaaagatatgttTTCTCTCTATGAATTGTTTAATCGCAAAGTAAATCATTGCACCTCTGGTTCCAAATTGCAACAAAATACAGATACATTTCATTGGTTGAAATAAAAAGACAACACACATTCTTGTTAAACGATGTCTTCTTTGGGATCTGACCAAAGCCACAGTTGTTTATGGTAAACACCTAGCCGAGCTCTGTGTTGTACGGTGACCGACCGACCGTCTCTTACCATTCACCCTGGCCAGTTAAAATCATTGGTCAGTCAAGTAAGCCCACCTTTTGGTGACTGCATTTttctaatcccccccccccccaaaaaacagaaAAACGGACACCGCCTAACAGATGGTTATTGTGCTCACTAAAATAATAGCATGCTAGCGTTAAAGGCAAATATCAGTTATTGGCAGGAGGATGTGAATTTAATCAAAACGGTGAAGCGGCAGTGAACACATGCAATCTAGGACCTAAACGCTCAATTAAATCACAAACTATCATGGACTACCTCAAAGACTTggatgcatatatatatatatttttttagcatGATCCAAAAAACAAAACCAGTGGCACTGTAACGCTCTTGAAGGTGAGAAATAAATCTAAGAAAAGAAATACACTTAAAATAAACATCCTAATACAGCTTTCACTTTTTACCCCTTTAATTATCTCACCCTAATATTGCTCCTCTTCAAGCATAACACCTCTTAGTTTTCCTCTTTTCTCTAATATAGCCTGGGGATGTAGCCCCTGAACATCGGATTTGTCTtcgctgtatatatatgtgtgtgtgtacacgtttcATCACTGCTCCTGCCCGTCCTCCCTGAGCTCGGAGGGCAGGAACTTGTACTGCTGCTGTCGGATGGTGGCCAGCTTCTTTCTGGCCTCGTCcaactccctctccttcctcagcaTTTCCTCCT

Function

NR:

description
Talin-1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU415210 True 1780 lncRNA 0.36 3 9912021 9913862

Neighbor

gene id symbol gene type direction distance location
LOC110523166 LOC106571594 coding upstream 37792 9870627 ~ 9874229 (+)
ca9 LOC106571618 coding upstream 77848 9810724 ~ 9834173 (+)
dcp2 dcp2 coding upstream 114198 9782455 ~ 9797823 (+)
LOC118964779 NA coding upstream 186456 9725438 ~ 9725565 (+)
LOC118964774 NA coding upstream 200052 9711751 ~ 9711969 (+)
LOC110523169 NA coding downstream 195010 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 348843 10262705 ~ 10281350 (+)
gp130 gp130 coding downstream 369138 10283000 ~ 10300246 (+)
slc38a9 slc38a9 coding downstream 427370 10341232 ~ 10366701 (+)
LOC110523175 LOC106571461 coding downstream 488233 10402095 ~ 10420627 (+)
G365233 NA non-coding upstream 321 9911385 ~ 9911700 (+)
G365198 NA non-coding upstream 876 9885314 ~ 9911145 (+)
G365199 NA non-coding upstream 30760 9879262 ~ 9881261 (+)
G365223 NA non-coding upstream 33254 9878531 ~ 9878767 (+)
G365218 NA non-coding upstream 40862 9870868 ~ 9871159 (+)
G365234 NA non-coding downstream 155037 10068899 ~ 10591997 (+)
G365304 NA non-coding downstream 190126 10103988 ~ 10156606 (+)
G365310 NA non-coding downstream 213712 10127574 ~ 10130183 (+)
G365371 NA non-coding downstream 339313 10253175 ~ 10253992 (+)
G365197 NA other upstream 62867 9848703 ~ 9849154 (+)
G364850 NA other upstream 682790 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 1065905 8775134 ~ 8849107 (+)
G362662 NA other upstream 1992456 7918922 ~ 7919565 (+)
G362554 NA other upstream 2219507 7690440 ~ 7692514 (+)
G366748 NA other downstream 1062820 10976682 ~ 10977152 (+)
G366973 NA other downstream 1511780 11425642 ~ 11428710 (+)
G367684 NA other downstream 1964467 11878329 ~ 11880035 (+)
G368440 NA other downstream 3194834 13108696 ~ 13109134 (+)
G369763 NA other downstream 3851385 13765247 ~ 13769296 (+)

Expression


Co-expression Network