G365310


Basic Information

Item Value
gene id G365310
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10127574 ~ 10130183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU415294
tgaactTTGGTAGAAGAGACTCTATAGGACACctgaggtagtagagactggaATAAAACAGCAAGATGTtctttacaaataaaaaaaagtacCACCAAGTgacacaggaaacaggaaacaatttcacacaaattTCAGTCCAGCTTAGATCCAAAAAAAGCACATAAGATTACATCACATCAGCATAAAATAAGACAAAATAGATAAAGACCAGCAAGCTGGCTGAGACACAGGTGGACAAGAGGATTCAGAAGGCATTAAGAGATTGGTAAGAATTATAGACATGACAAATTGAAGTAATACTGATTAGCTTTTATGAATGACAGAAACAGATTTTTCTTCCAGTATATAAAAAAGACCAGAGTGCATAACTTTAAAGCTTTTAAAAAGGCATAAGAAAAATAACCCGAAGCAGGAACCAAAAAATAAAATGGAAAAGAGTGTGGTATAAAAATACAGTCAAGTACAATCATTTTAGCTACCAAACTTCACATGTATTTACATTTAACTCTTCAAGCTTGATCAGCTTGTACTCCATGTAAAGAATAGGATTTGTTTTAAATAGATTATATTTTCtgcttcatttttattttatttgtttaattgTCTCAAACCCTTGCCATTAAGGAATTCCAGATAAAAATAGCAATTAAATGCATATTCCCCATTTAAAAAAAGGTTGACTTAGGAAACATTCCACATGTTAATTATCATCCTTTTACTTTAATGGATTAcaaccagaacaacaacaacacttgGAGTTATAGTTCATAAATTAACACCATTTAGGAACATGTTTGAGAATTCTAATCAAAGGGAGATGGTAAAACATTTGAGCAGAAAAGTCAGCCTTAAATCGGAAATATCCCTccaccaaaaataaaaaaaattgtacagcatttatattcattatatagagTATCCACAATGGAAAATAGAAGAGTCATAGAAAACCTCAgatgtacatggattttataacaatttgttttaaaaatagagccaagataaaaaataataaaaaattgaaTTGTTGAATTGTAGCGTGACATTCTACAAAGGAACAGCACCAGAAGAATGGTAGATCAATATTGAATATAGCGGTTTTGAATGTATGGACACAGCATTTAGGGCTcataaaattatttaaaaaaggcTAAAATATGTGCGATGCACATGGCTCAATTGTAACAGCGAGAGTTAAGAGACCAACAGGGTGTTTTCATTTTAACAGTGTGGTACGACATCAAAGTGTGTTTCGGAAAACTTACGCCCATACACAATAAATGTCTCAATCTCTTAAGGATAGCTTTGAATATACAATAACACCAAAAAAAGATGTTTAGATCTTTTTGGGGTgttattgtatatatatatatatatatataaaatcataACTTCATACATGGGATCTTTatctcaaaaaaataaaataataaaataacatttgagaCAATGCGGGCATCATAAGCGTTCACATTCAGCGTTATGCTAGCCAAACTAGCAATGTTTCTGTTAGATAAATCACCGCTCCCTGAAATACTTAAGTAATCTTCATGATTATTCGACTAAGCTTTATGGCCCAACAGTAAAAATGCACATCTTAAAAAGCATCTTTATAGAAATGCAGTTATGcacaaattcaattgattaaaaCAGCTTCATTATGCCTTTCTTCTACACATAGGATACtctaaaaacaaaaacagagtcgGAAACTTATGACCCGACGTTACAACATAACAGTGATAAAAACCATTTTACTCCGTCGTCTCCAGATCGCGGTTCTAAGGACTTATTTGTTGACTCACGGGGGGTTAAAATGGGAAGAGGAACTTCTCGAAACCATTGCAAAATGGCTACCAAAGTGCTAAAGGAACCATTTCTTTACCAGAACAGAGGCTTGATAAAACAGAGCAATACAGACTACAGTATACCAACATGGCACTAACTAAGAAAGCACCGTTTTCGTAGTAGAACTTTTGCGACTCGCTTTTTGCATTTTGTGCTAAGGTACAGCAGTTTGAGGCCATAGTAGTGGAACGGGAGGGTATTACCCAGGTATCCCATCCATCCCAGGCCCTCCACTCATGACTGGGGGCAGCTTGGTGTGGATGGAGGGCAGTCTGGGGTCAGGGAGGCTGGTCGGTGGTGGATGGAGGTCGGTCTAGGGTTAGGGACGCTGGTCTTGTGTTATGGAGGCTGGTCTGATTGTCAgcggtgggaggaggagagaaaagcagGCAGGCTGGCTGGGCCTTCAGTAGTAGACACTATGGGATAGGGAGGCTAGGGGACTGTGGGAGGATGTTGGGGACTGTGGGAGAATGTTGGGGACTGTGGGAGAATGTTGGGGACTGTGGGAGAATGTTGGGGACTACCAGTTGAGGCGGAAGACGGGGTGCTTGAGGAGTTCCCTGGATGGGGGCCGGTCGGCAGGCTGCAGCTCAAGGCAGCGCAGGGTGACGTCCCTCAGGCCAGGGGTCAgttggggagggatggagggcgcCGT

Function

NR:

description
mitogen-activated protein kinase kinase kinase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU415294 True 2509 lncRNA 0.39 3 10127574 10130183

Neighbor

gene id symbol gene type direction distance location
LOC110523169 NA coding upstream 3038 10108872 ~ 10124536 (+)
LOC110523166 LOC106571594 coding upstream 253345 9870627 ~ 9874229 (+)
ca9 LOC106571618 coding upstream 293401 9810724 ~ 9834173 (+)
dcp2 dcp2 coding upstream 329751 9782455 ~ 9797823 (+)
LOC118964779 NA coding upstream 402009 9725438 ~ 9725565 (+)
ankrd55 ankrd55 coding downstream 132522 10262705 ~ 10281350 (+)
gp130 gp130 coding downstream 152817 10283000 ~ 10300246 (+)
slc38a9 slc38a9 coding downstream 211049 10341232 ~ 10366701 (+)
LOC110523175 LOC106571461 coding downstream 271912 10402095 ~ 10420627 (+)
psd3l LOC106571427 coding downstream 314901 10445084 ~ 10584743 (+)
G365235 NA non-coding upstream 213712 9912021 ~ 9913862 (+)
G365233 NA non-coding upstream 215874 9911385 ~ 9911700 (+)
G365198 NA non-coding upstream 216429 9885314 ~ 9911145 (+)
G365199 NA non-coding upstream 246313 9879262 ~ 9881261 (+)
G365371 NA non-coding downstream 122992 10253175 ~ 10253992 (+)
G365382 il31r non-coding downstream 174286 10304469 ~ 10306459 (+)
G365397 NA non-coding downstream 190227 10320410 ~ 10321195 (+)
G365422 NA non-coding downstream 203574 10333757 ~ 10334427 (+)
G365440 NA non-coding downstream 232279 10362462 ~ 10363308 (+)
G365197 NA other upstream 278420 9848703 ~ 9849154 (+)
G364850 NA other upstream 898343 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 1281458 8775134 ~ 8849107 (+)
G362662 NA other upstream 2208009 7918922 ~ 7919565 (+)
G362554 NA other upstream 2435060 7690440 ~ 7692514 (+)
G366748 NA other downstream 846499 10976682 ~ 10977152 (+)
G366973 NA other downstream 1295459 11425642 ~ 11428710 (+)
G367684 NA other downstream 1748146 11878329 ~ 11880035 (+)
G368440 NA other downstream 2978513 13108696 ~ 13109134 (+)
G369763 NA other downstream 3635064 13765247 ~ 13769296 (+)

Expression


Co-expression Network