Gene
RNA
| Item | Value |
|---|---|
| gene id | G366277 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 10333768 ~ 10334422 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU416363 | True | 576 | lncRNA | 0.49 | 2 | 10333768 | 10334422 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ddx4 | vas | coding | downstream | 3334 | 10318236 ~ 10330434 (-) |
| LOC110523172 | il31r | coding | downstream | 15680 | 10303641 ~ 10318088 (-) |
| map3k1 | map3k1 | coding | downstream | 153679 | 10127268 ~ 10180089 (-) |
| hmgcs1 | LOC106571543 | coding | downstream | 250387 | 10068877 ~ 10083381 (-) |
| tln1 | LOC100380665 | coding | downstream | 274619 | 9912012 ~ 10059149 (-) |
| sh2d4a | sh2d4a | coding | upstream | 40689 | 10375111 ~ 10395552 (-) |
| LOC118964559 | NA | coding | upstream | 134844 | 10469266 ~ 10475168 (-) |
| LOC110523178 | c209a | coding | upstream | 308435 | 10642857 ~ 10643948 (-) |
| cd209a | cd209a | coding | upstream | 328198 | 10662620 ~ 10663665 (-) |
| nrg1 | nrg1 | coding | upstream | 359138 | 10693560 ~ 10851760 (-) |
| G366302 | NA | non-coding | downstream | 38074 | 10295022 ~ 10295694 (-) |
| G366279 | gp130 | non-coding | downstream | 49130 | 10282935 ~ 10284638 (-) |
| G366199 | NA | non-coding | downstream | 177162 | 10104010 ~ 10156606 (-) |
| G366215 | NA | non-coding | downstream | 209304 | 10123523 ~ 10124464 (-) |
| G366140 | NA | non-coding | downstream | 362217 | 9970962 ~ 9971551 (-) |
| G366314 | NA | non-coding | upstream | 66058 | 10400480 ~ 10420621 (-) |
| G366368 | NA | non-coding | upstream | 98219 | 10432641 ~ 10434070 (-) |
| G366472 | NA | non-coding | upstream | 239152 | 10573574 ~ 10575091 (-) |
| G366448 | NA | non-coding | upstream | 246906 | 10581328 ~ 10584712 (-) |
| G366531 | NA | non-coding | upstream | 322120 | 10656542 ~ 10661403 (-) |
| G365752 | NA | other | downstream | 1143670 | 9189669 ~ 9190098 (-) |
| G364754 | NA | other | downstream | 1283060 | 9047542 ~ 9099000 (-) |
| G364322 | NA | other | downstream | 2029585 | 8303267 ~ 8304183 (-) |
| LOC110524941 | LOC106572051 | other | downstream | 3607788 | 6562531 ~ 6726634 (-) |
| G363470 | LOC106572095 | other | downstream | 3779053 | 6543675 ~ 6554715 (-) |
| G368612 | ctxn3 | other | upstream | 1799630 | 12134052 ~ 12136790 (-) |
| G368921 | NA | other | upstream | 2371144 | 12705566 ~ 12706092 (-) |
| G370333 | NA | other | upstream | 3872768 | 14207190 ~ 14208705 (-) |
| G370635 | NA | other | upstream | 4092916 | 14427338 ~ 14428591 (-) |
| LOC110524957 | LOC106569957 | other | upstream | 4658706 | 14988147 ~ 14995197 (-) |
