G366314


Basic Information

Item Value
gene id G366314
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10400480 ~ 10420621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU416405
ATCAATCAGCAGCGTTTATTCTccagagtactgaacacgatacattttaccacaggttacaaactgaaaatgacgtcattcgTTTTCGAACTGTCCCGTCTCTTCTTCACCCTGGTACAAAGgctgtatagttctcaagccttcccacatcgtctcTCCTAATTTAGATAATTTACGACCGAGCCAAGGtctgcctgtgtagataagcattctagccagtctagcgataagttcattcatttctaccaaggaacagacagtcattgttctaattcttgattatatttacacacattatattcagtactaggattaaaataaaattcatacatctatacagtaacataatagtattctgactagtcagtcctgattgaaatctatacataattagtcatgaTTGATAAAAAATCCCTTTCCTGTCTTGCTTTAATATGAATCtcaccagattgggtctgctggATGATCAAAATTTCTCCCTAAGAATTAGCCACCTAACTCCCTCCCTGTAGCTCTGCAGTGAGGCCGTCGATATGATGGGGGAGTATATGTAGCTATTCTCTTTGACATGTGTCTTAGAAATGCGTATTAAGAATATTGGTAGAAGTAATAACTTGTCATACAGTAAATCATTTGTCTGGATTTCTTGACTCAGAAATGCCctaaactaaactgttgttctgatctgtcctCTCTCGAGGTTATGGCAAAGGTGACCTCAGATGGTATCTTTGGACCACAgatggccgtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataacg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU416405 True 799 lncRNA 0.38 2 10400480 10420621

Neighbor

gene id symbol gene type direction distance location
sh2d4a sh2d4a coding downstream 4928 10375111 ~ 10395552 (-)
ddx4 vas coding downstream 70046 10318236 ~ 10330434 (-)
LOC110523172 il31r coding downstream 82392 10303641 ~ 10318088 (-)
map3k1 map3k1 coding downstream 220391 10127268 ~ 10180089 (-)
hmgcs1 LOC106571543 coding downstream 317099 10068877 ~ 10083381 (-)
LOC118964559 NA coding upstream 48645 10469266 ~ 10475168 (-)
LOC110523178 c209a coding upstream 222236 10642857 ~ 10643948 (-)
cd209a cd209a coding upstream 241999 10662620 ~ 10663665 (-)
nrg1 nrg1 coding upstream 272939 10693560 ~ 10851760 (-)
wrn wrn coding upstream 451228 10871849 ~ 10907802 (-)
G366277 NA non-coding downstream 66058 10333768 ~ 10334422 (-)
G366302 NA non-coding downstream 104786 10295022 ~ 10295694 (-)
G366279 gp130 non-coding downstream 115842 10282935 ~ 10284638 (-)
G366199 NA non-coding downstream 243874 10104010 ~ 10156606 (-)
G366215 NA non-coding downstream 276016 10123523 ~ 10124464 (-)
G366368 NA non-coding upstream 12020 10432641 ~ 10434070 (-)
G366472 NA non-coding upstream 152953 10573574 ~ 10575091 (-)
G366448 NA non-coding upstream 160707 10581328 ~ 10584712 (-)
G366531 NA non-coding upstream 235921 10656542 ~ 10661403 (-)
G366575 NA non-coding upstream 321082 10741703 ~ 10741976 (-)
G365752 NA other downstream 1210382 9189669 ~ 9190098 (-)
G364754 NA other downstream 1349772 9047542 ~ 9099000 (-)
G364322 NA other downstream 2096297 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 3674500 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 3845765 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 1713431 12134052 ~ 12136790 (-)
G368921 NA other upstream 2284945 12705566 ~ 12706092 (-)
G370333 NA other upstream 3786569 14207190 ~ 14208705 (-)
G370635 NA other upstream 4006717 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 4572507 14988147 ~ 14995197 (-)

Expression


Co-expression Network