G366977


Basic Information

Item Value
gene id G366977
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11433667 ~ 11437320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU417158
TTTTATTGTCATCTTGAAAACACCTGTGTAATACATCATGTCACATACACATAAAAGTAAATATCCAGCTCATGAGTAGTTCATACAAGGAAAATATAATACTGTAGGTCACTATAATAGTACAATTATGTATTATCAGTTTAGGTCCATCTGAAGACTCAAAAGAGATACAGCAAACATTTTCTGTTACAGGATAGCTATTATACAAATCAAGAATTCAAAGAAACCACTTGACTTCTTTCTTTTTTACCAGACACGCCATTGACACGTTTTATTACTACCAGTGTGTCTCTACAGCCGAAGAGTCCGATTCAAACActcccagctacagtacagacatgtTGAGAACGTGTGAAAGAACAGCAGGAGAAAACGACATTTAGCAGTTGCATGGTGAATTTGTGAGAGGCTTTTGAGGGTTTGTTCACCGCTTGAATTCTAATTGTGTTAGGCTACATGGAGGAAAGGTCCCAGAGAATATTGGTGAGGTGAGCAGCTGGCGTTACGCTTGAACAGATGCGACGCCAGAATAGGGCAGGCTAGGATCTCTGAACTGGCTTCTCCACGTTCACAAAGCAGAAAATGCCAGACCGAGGAGCAGCGCACTACAAACAATTGTTTCAAAAAGGTGAAGGGAAAGTGACCTGCTGTCAAGGACACCGTACTGTACATAGTAGAGTGCCAATTAACCTAAGAGGGGTCAAGGGGGTCAACATTTGATCATTAGTGTGTTATCATTAGAGCCCCTGGTATACAGAGAAGTACGCTGTTtctctttttgtgtgtgttatgaaTGGAATGACAATGCCGTTTATGACTTATTCAATAACAAAGGCTAAAGTGACCTGTTATTAACCAgtttgtcttgtttctgtccaTACTGCATATACCGTAGTAAGGCTTCATCTCTGTCTCAATGTTTCACAGAAGCTGAACAGACAACACTTCAATATCTTGGGACCCGCATACTAAGAGGGCTGTTGTTACTGCACCAGAAAACACAATATAAAGCTGTACACATGCTGAAGTCTATAAAACAACAAATAGTATATATTTCATCAAGGAGGTGGATGAATGTACAAGGGGAGGCAGCCAATCACACATAGAATTCTCTCTCATTCACACGTACAGCATTCTCTCTACCACTTTGTCGACAACTGTCTTGGCAGCGGAACCATCTAGAGACGTTTCCCGTCTTTAGATAACAGTGTTGACATTGTGAGAAAATGACTTGGCTTTCTGACAGGCTGCATTTTCTCACTATCACACGTCACAATCATGCCCACTGGGGTTCAGTTGGGAAGACATCGGAACTTGCTTTCTCTTGTTCCACTATTAGGACTCGTCTTACGTTTTCCGCTACAAAAGTAGGAGACTTTCCACTACGCCCCTGGCCCATTGAACCCCTACTCACACACCACTCGTAAAAAGGAATTCAATCCTAACAGTTATGCATGGCACAGACTGATGGCTATTCACAGAGaaacaggcttttaaaatatTGCACTTATTGGCCCATTGCACCTCAAGACGAGACCTGAAGGTgcacaaatacaatacaataagTATAccgatatagatatatataaataGAACTTGCAAAATTTCATGCAAGTGTGCTGCTGAAAATTGTTTGCTACTGAAAATGCAACGATTCGGAGGCAGTTCGTTTTCACAAGTGCAACAATCGATTGCAGCATTTTCTACAAgacactatttggcatgacaCTTGGTCTAGCTAATAGTAACATACCCTTTTTCACAAAATAATCTAACAACACCTAAAAACAGCTTCCTTTCTATTTGTTTTATAGCACATTGGCACGTGGGGATAACTGTCTCTGGTTTCTTCAAGGGAACTTTTCTATAACAATAGAAAAGTAACAGAGTCGAAAACAGAAGTAAAACATTACTGCAAGTACAGTAaatgaatggtgaataatgtcAGAAGGAGTGTCTCTAATAAAAAGTATTTGAGGTGAAGTCCAGAGAATGAGATGGTATGAATTATGGAAGTGGCTCCTTATTCATAATCCTGTAGTCAAGTCAGGTCAGACTTTTGAAATATTGATGCCGTGACTCACATCCCTGAAATAGTTGTCTGGGACCTCTCCTTGGGCTCTCTGTATGTCTCACAATGTCTCTCAATCTGTATTGTTCCAGGAACTGGCATTATTATGAGCTTTCTGCTGTTAATTTAGGACCATTTCATTAACAGTCGCAGCACTGGACCTAGCACTGCAGTACGGAACCCATTTGAGGACATCCGTAAACCCAGACTGAAACGTACGGCTGACAACTGAGAATGACCTACAATGGATTCCGCACTGCAGAAATGATTAGGTCTTAGTTACTCCAGATGACTGACCAGTTGGCAGTATTGCACAGACCATTGCTTGTACATAGATATAACATTGAGAAACTGTTCTCTGCACTCACAGATGCATACTGTTTTCAAACAACAGTCATCGGGTTAGTAATCATACCACTTTACAGCCACATTAAATGTACCACTTATTTAATGAAGTAAACTGTTAAATACCACACTGGCATTATTATCATGACTACCTACCTATCCTACaatatagtactgtacatgttagtATTAGACAACTGTTATACTATGGCAGCTAATCCACAGTCACTGAACAAACTACTTTATTAATATCCTGAGAATAAAGCCATGCATCTGTCTAACCACAGATAAATACATTGGTTCTAACCACAGATAAACACATTGGTTCTAACCACAGATAATCACATTGGTTCATTCTAACCTCGGATAATCACATTGGTTCATTCTAacctcagataatcacattggTCCATTCTAACCACAGATAATCACATGGGTTTCACAGCTAGTGTGGCGATGGAAAAAATATGAAACAATATACAAACAACTAACTGAAAGGCATCACTTTCGTAAGGTAGGTAATACTTTTTTACGGTAACGTTCAATGCTTaaaagtgacacacacacacacacacacacagtaggaatAGTGGGAGGGAAGAAATACAGGATATGCAAGAGGGAACTGGCAACTTAACCATACACAGATCATCATGTCATTGACAGAGCATTCCATAAACAACACACTATTTTCTCTGGTTAATATAGTATATAGAAGATcctgtatttctgttttatataaataaatagataaatgTACCGACTGACGTGGCATTAGTGATTCATGGTCATCGCATACTGACATGGCATTACTGTACATGTCTATTTTTCAGTTTTGTGAACGTACAACATATGTGTCAGACAATttgaaacataaaaaaaatctgaaaaaatgtACTAGGCACATCAGAAGTCAGATATGAAGAATAATACACTTTAAGGTATTACAGATCTACCTAAGGGATAATACAATATTTTGGCAATCTCATACGTCTTAGATTGTTGTCATTTTCCTGGTTAACAACCGCAGTTGGGCTGCTGCAAGGGAGGAGGGTTGTCAGTTAGCCTAGCATTGGACGTTCCTGTGGTGACAGACGGGTCAGTCTCTAAACTGTCGGACATCTTGTCGCATATGAGGTCGACGAGACGCTCAAATGTTTGTTTTACGTTGACATTGTCCTTGGCACTCGTCTCGAAGAACT

Function

NR:

description
ras-related protein Rab-3C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417158 True 3618 lncRNA 0.40 2 11433667 11437320

Neighbor

gene id symbol gene type direction distance location
LOC110523188 pde4d coding upstream 14734 11026101 ~ 11418933 (+)
depdc1b depdc1b coding upstream 429026 10984720 ~ 11004641 (+)
LOC110523186 LOC106571348 coding upstream 449154 10974098 ~ 10984513 (+)
ppp2cb LOC105021738 coding upstream 469945 10953016 ~ 10963722 (+)
LOC110523183 tex15 coding upstream 482466 10931536 ~ 10951201 (+)
LOC110524952 NA coding downstream 65323 11502643 ~ 11507284 (+)
LOC110523192 plk2 coding downstream 70369 11507689 ~ 11513262 (+)
trnaa-agc-2 NA coding downstream 164140 11601460 ~ 11601532 (+)
phax phax coding downstream 366600 11803920 ~ 11808076 (+)
lmnb1 lmnb1 coding downstream 395589 11832909 ~ 11854832 (+)
G366973 NA non-coding upstream 4957 11425642 ~ 11428710 (+)
G366969 NA non-coding upstream 10866 11422577 ~ 11422801 (+)
G366777 NA non-coding upstream 167670 11146283 ~ 11265997 (+)
G366874 NA non-coding upstream 264230 11169065 ~ 11169437 (+)
G366861 NA non-coding upstream 283754 11149623 ~ 11149913 (+)
G367014 NA non-coding downstream 50128 11487448 ~ 11488048 (+)
G367420 NA non-coding downstream 105278 11542598 ~ 11542839 (+)
G367424 NA non-coding downstream 109724 11547044 ~ 11547288 (+)
G367431 NA non-coding downstream 115175 11552495 ~ 11552834 (+)
G367436 NA non-coding downstream 117177 11554497 ~ 11554732 (+)
G366748 NA other upstream 456515 10976682 ~ 10977152 (+)
G365197 NA other upstream 1584513 9848703 ~ 9849154 (+)
G364850 NA other upstream 2204436 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 2587551 8775134 ~ 8849107 (+)
G367684 NA other downstream 441009 11878329 ~ 11880035 (+)
G368440 NA other downstream 1671376 13108696 ~ 13109134 (+)
G369763 NA other downstream 2327927 13765247 ~ 13769296 (+)
G370360 NA other downstream 2818483 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2883784 14321104 ~ 14325895 (+)

Expression


Co-expression Network