G367505



Basic Information


Item Value
gene id G367505
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11608719 ~ 11611874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU417718
ATTTACTACTGCAAAGCTATTACCATTACAACAGAGCCGTATCAAAGCTACATTAAAGTGTTACAAGTCACAAACAAAGTCATAATTTATTATTAACAACAAAGTTTTCATTCAATCCATTGTTGGAACCATTTATAGATAAACCTAATATACAGAAGACAAAGTTGCCTGAGAAAAATGATGACGTTGTACTATAGCAACCACTAAtgaaaccagtggaggctggtgggcggagatagaggaggacgggctcattgtaatggctggaatggaacggtgtcaaacatgtggtttccatatctttgatgtgtttgataccgttccctTAATTACATTCCAGCCATTACGATGAGACTGTCCTCCTACAGCgccccccaccagcctccactgaatgAAACACATGTACCCAGCAACATAGGAGACAGGATAGACACTCGCAGAACATCAGCAAAGACTGTGGGTGATCTCTAAGTACATTTACACTGGAGCATCTGAGTGTCTTTGTACTTTGTTCCATTAACCACCCAAATGTAAGAACATTGACGTTCCATCAACCAATCACATGTAAGAACATTTAAGTGCCCTTGAGTGCTTGAACAGGTTTCTTGCTTAAAAAGGTGACCTTGGTAAGGAGCATTTTATATCACATtaacagagtgtacaaaacattaagaacacctgctctttccatgacatagaccaaccaggtgaaagttatgatcccttattgatgtcacttgttaaatcaatcaactttaatcagtgtagatggaggggaagagacaggttaaaggatttttaagccttgacacaattgaaacatggattgtgtatgaagTGCCATTGAGAGGGTGAATGTGCCAGATAAAATACTTGCCtctgaacaggatatggtagttgGTGCTAGGagcatcggtttgtgtcaagaactgcaacgctgctgggttttccacgCTATATAGTTTCCTAGGTCACCTCAAGaacagtccaccacccaaaggacatccagccaacttgacacaactgtaggaagcattggagtcaacatgggccagaatccctgtggaatgctttctacaccttgtagagtccatgctcgcagaattgaggctgttctgaaggcaaaatgagtgccggggggggggggctcaatattaggaaggtgttcttaatgtttgatATACTCAGTGAATATGCTACCATTTTAAAATGGTGAAATGAACAATGAAATACCTGTTTTGAATAGAACAGTATACTTGTAGTGAAATCTTTACTTAATATGTTGGCTTAATGGATTCGTCATTTGTCTCACTTCATTCTAAGAGGTCATTGCACCTCTATTTGTTGTAGTTATTTACGTCTGTATTTGTCAGGGCAAATCACTCAAAATAACTGTGTTATTGTTGATGTTGACATTTTTATTCTGATACCCATTATGTATTTGTACTATACTTCTTATTTCATTCTATTGAATGAAAGGTTCATTATCTGAATTTGATTGATACACTAAGCTGACAAATGTtgtcaagcagagagagagaggtgatactgtagtagttacagtaaCAAGTCATAGTGCAAAGGTGATCTTGTGCAGAGTTGCATTAGGCAGAAATGGCATGGGATGATTTCTTCTACATCTTCCTGTATTTTGTTAAAtgtatctaggcaagtcagttaagaacaaattcttattttcaatgatgacctaggaacagtgggttaactgccttgttcaggggcagaatgacagatttttaccttatcagctcatggattcgatcttgcaaactttcggttactaggctacctgcctctctaaccactaggctacctgcctctctaaccactaggctacctgcctccctatAAAGATACTACATCTGTATGTGCCATTTTTCTCAACATGCTCCAAATCTTGGTTTGCAGTAGACTTGAAAAATGTGTAAATGTCAAGTTACAGCTAAAtgctattattatttttgtttagCACTTCAAAAAGGTTCTGTTTAGAAAATTGTATCAGGTATTTTTTGGTGGATTAAATGACTGACCGAAATATTCATGATATTTCACAAAAAAAATTGGATTTTGCATGAATGACTCGGATGAAAGATGTGTGAAACAATGAATGCACAATCAAAGGTTCAGGACATAAGACAGGGCATTACAAATGTTAGTTTTGAGTTAGTAGTTTTGTTCTTAGTTATATTCCACTTACTTCTGAAAAATGCACCTAAAAATAAAACACCGGTAAAACCCACAGAAAGTTTTTACAGAACAGCTTAAATGACATAACCAGTCTTAGCAATGACTCACTCTCTTTTTGGTTGGGAGATTGAAGGTCTCTGGTGTCCTAATACTCTTCTGTTACCTTTCGTGCTAGTTAATATAGCTCCATGGGGACTCTAGTGAACCTAACCAAGGCTGATAGGTTACACATGCTACTGTAGCGTAAACTCAAGATGAAGGGCTTTCAAATAAACATGAATTTCAAAGTACTTCATAGGTTGGCTAATGAAGTATTTGACAGCACATGCAGAATCATTTTAAGGTCAAAGCTGTGGGTCTATGAAGTATAGTTTCAAAGCAGCCGAACATGGTTTTAAAGTAGCTCTGATCACAGCCGAACATGGTTTTAAAGTAGCTCTGATCACAGCCGAACATGGTTTTAAAGTAGCTCTGATCACAGCCGAACATAGTTTCCTTGTTCattaatacatacagtacattttggTAATTTATCCAAAGCTCTTATCCTGAGCGACACATTCAGGCAGAGCAACCTGCTAGAAAGTATCGTCTGGTTGATGATGATCAGTGGTCGAACATCTGATAAATTACCACTCGATTAAGGCG

Function


NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
TU417718 True 2859 lncRNA 0.39 2 11608719 11611874
Loading

Neighbor


gene id symbol gene type direction distance location
trnaa-agc-2 NA coding upstream 7187 11601460 ~ 11601532 (+)
LOC110523192 plk2 coding upstream 95457 11507689 ~ 11513262 (+)
LOC110524952 NA coding upstream 101435 11502643 ~ 11507284 (+)
LOC110523188 pde4d coding upstream 189786 11026101 ~ 11418933 (+)
depdc1b depdc1b coding upstream 604078 10984720 ~ 11004641 (+)
phax phax coding downstream 192046 11803920 ~ 11808076 (+)
lmnb1 lmnb1 coding downstream 221035 11832909 ~ 11854832 (+)
LOC110523202 NA coding downstream 307864 11919738 ~ 11922926 (+)
megf10 megf10 coding downstream 335127 11947001 ~ 12051563 (+)
prrc1 prrc1 coding downstream 445078 12056952 ~ 12093392 (+)
G367480 NA non-coding upstream 16341 11591912 ~ 11592378 (+)
G367436 NA non-coding upstream 53987 11554497 ~ 11554732 (+)
G367431 NA non-coding upstream 55885 11552495 ~ 11552834 (+)
G367424 NA non-coding upstream 61431 11547044 ~ 11547288 (+)
G367420 NA non-coding upstream 65880 11542598 ~ 11542839 (+)
G367506 NA non-coding downstream 1434 11613308 ~ 11613608 (+)
G367520 NA non-coding downstream 6246 11618120 ~ 11618340 (+)
G367529 NA non-coding downstream 20614 11632488 ~ 11632839 (+)
G367530 NA non-coding downstream 21145 11633019 ~ 11633228 (+)
G367532 NA non-coding downstream 23219 11635093 ~ 11635302 (+)
G366973 NA other upstream 180009 11425642 ~ 11428710 (+)
G366748 NA other upstream 631567 10976682 ~ 10977152 (+)
G365197 NA other upstream 1759565 9848703 ~ 9849154 (+)
G364850 NA other upstream 2379488 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 2762603 8775134 ~ 8849107 (+)
G367684 NA other downstream 266455 11878329 ~ 11880035 (+)
G368440 NA other downstream 1496822 13108696 ~ 13109134 (+)
G369763 NA other downstream 2153373 13765247 ~ 13769296 (+)
G370360 NA other downstream 2643929 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2709230 14321104 ~ 14325895 (+)

Expression


G367505 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

G367505 Expression in each Bioproject

Bar chart with 19 bars.
G367505 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network