Gene
RNA
| Item | Value |
|---|---|
| gene id | G367601 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 11692828 ~ 11693054 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tc1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU417818 | True | 227 | lncRNA | 0.54 | 1 | 11692828 | 11693054 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523194 | LOC106571259 | coding | downstream | 44316 | 11642465 ~ 11648512 (-) |
| LOC110523193 | gpbp1 | coding | downstream | 62702 | 11619804 ~ 11630126 (-) |
| LOC110523189 | rab3c | coding | downstream | 194627 | 11433653 ~ 11498201 (-) |
| LOC110523190 | NA | coding | downstream | 235169 | 11444736 ~ 11457659 (-) |
| LOC118964560 | NA | coding | downstream | 435004 | 11256230 ~ 11258138 (-) |
| LOC110523196 | LOC106571245 | coding | upstream | 55403 | 11748457 ~ 11787242 (-) |
| aldh7a1 | aldh7a1 | coding | upstream | 94199 | 11787253 ~ 11794400 (-) |
| LOC110523198 | LOC106571668 | coding | upstream | 115279 | 11808333 ~ 11811017 (-) |
| marchf3 | march3 | coding | upstream | 163246 | 11856300 ~ 11878001 (-) |
| c5h5orf63 | cssa01h5orf63 | coding | upstream | 187252 | 11880306 ~ 11884575 (-) |
| G367599 | NA | non-coding | downstream | 4925 | 11687698 ~ 11687903 (-) |
| G367598 | NA | non-coding | downstream | 5417 | 11687197 ~ 11687411 (-) |
| G367597 | NA | non-coding | downstream | 7384 | 11685179 ~ 11685444 (-) |
| G367594 | NA | non-coding | downstream | 10188 | 11682421 ~ 11682640 (-) |
| ajm1 | LOC106571253 | non-coding | downstream | 22993 | 11667973 ~ 11697343 (-) |
| G367602 | NA | non-coding | upstream | 193 | 11693247 ~ 11693461 (-) |
| G367603 | NA | non-coding | upstream | 579 | 11693633 ~ 11693851 (-) |
| G367608 | NA | non-coding | upstream | 6694 | 11699748 ~ 11699979 (-) |
| G367723 | NA | non-coding | upstream | 67397 | 11760451 ~ 11760654 (-) |
| G365752 | NA | other | downstream | 2502730 | 9189669 ~ 9190098 (-) |
| G364754 | NA | other | downstream | 2642120 | 9047542 ~ 9099000 (-) |
| G364322 | NA | other | downstream | 3388645 | 8303267 ~ 8304183 (-) |
| LOC110524941 | LOC106572051 | other | downstream | 4966848 | 6562531 ~ 6726634 (-) |
| G363470 | LOC106572095 | other | downstream | 5138113 | 6543675 ~ 6554715 (-) |
| G368612 | ctxn3 | other | upstream | 440998 | 12134052 ~ 12136790 (-) |
| G368921 | NA | other | upstream | 1012512 | 12705566 ~ 12706092 (-) |
| G370333 | NA | other | upstream | 2514136 | 14207190 ~ 14208705 (-) |
| G370635 | NA | other | upstream | 2734284 | 14427338 ~ 14428591 (-) |
| LOC110524957 | LOC106569957 | other | upstream | 3300074 | 14988147 ~ 14995197 (-) |
