Gene
RNA
| Item | Value |
|---|---|
| gene id | G367562 |
| gene name | LOC105030512 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 11692906 ~ 11693137 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC110538898, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU417779 | True | 232 | lncRNA | 0.53 | 1 | 11692906 | 11693137 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| trnaa-agc-2 | NA | coding | upstream | 91374 | 11601460 ~ 11601532 (+) |
| LOC110523192 | plk2 | coding | upstream | 179644 | 11507689 ~ 11513262 (+) |
| LOC110524952 | NA | coding | upstream | 185622 | 11502643 ~ 11507284 (+) |
| LOC110523188 | pde4d | coding | upstream | 273973 | 11026101 ~ 11418933 (+) |
| depdc1b | depdc1b | coding | upstream | 688265 | 10984720 ~ 11004641 (+) |
| phax | phax | coding | downstream | 110783 | 11803920 ~ 11808076 (+) |
| lmnb1 | lmnb1 | coding | downstream | 139772 | 11832909 ~ 11854832 (+) |
| LOC110523202 | NA | coding | downstream | 226601 | 11919738 ~ 11922926 (+) |
| megf10 | megf10 | coding | downstream | 253864 | 11947001 ~ 12051563 (+) |
| prrc1 | prrc1 | coding | downstream | 363815 | 12056952 ~ 12093392 (+) |
| G367558 | NA | non-coding | upstream | 7928 | 11684758 ~ 11684978 (+) |
| G367557 | NA | non-coding | upstream | 8994 | 11683634 ~ 11683912 (+) |
| G367550 | NA | non-coding | upstream | 17510 | 11675189 ~ 11675396 (+) |
| G367549 | NA | non-coding | upstream | 18143 | 11674541 ~ 11674763 (+) |
| G367548 | LOC106571253 | non-coding | upstream | 19486 | 11667987 ~ 11673420 (+) |
| G367563 | NA | non-coding | downstream | 1283 | 11694420 ~ 11694639 (+) |
| G367565 | NA | non-coding | downstream | 3965 | 11697102 ~ 11697330 (+) |
| G367613 | NA | non-coding | downstream | 11774 | 11704911 ~ 11705213 (+) |
| G367628 | NA | non-coding | downstream | 52733 | 11745870 ~ 11746091 (+) |
| G367631 | NA | non-coding | downstream | 55337 | 11748474 ~ 11749971 (+) |
| G366973 | NA | other | upstream | 264196 | 11425642 ~ 11428710 (+) |
| G366748 | NA | other | upstream | 715754 | 10976682 ~ 10977152 (+) |
| G365197 | NA | other | upstream | 1843752 | 9848703 ~ 9849154 (+) |
| G364850 | NA | other | upstream | 2463675 | 9228838 ~ 9229231 (+) |
| cdc42se2 | cdc42se2 | other | upstream | 2846790 | 8775134 ~ 8849107 (+) |
| G367684 | NA | other | downstream | 185192 | 11878329 ~ 11880035 (+) |
| G368440 | NA | other | downstream | 1415559 | 13108696 ~ 13109134 (+) |
| G369763 | NA | other | downstream | 2072110 | 13765247 ~ 13769296 (+) |
| G370360 | NA | other | downstream | 2562666 | 14255803 ~ 14259133 (+) |
| G370382 | smarcb1 | other | downstream | 2627967 | 14321104 ~ 14325895 (+) |
