G367630


Basic Information

Item Value
gene id G367630
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11750128 ~ 11752425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU417847
TGAAACAGTTCTATTGATGAAACAGTTCTATTGGTGAAACAGTTCTATTGGTAAAACAGTTCTATTGGTGAAACAGTTCTATTGATGTAAGTAAGAGTTCTATTGATGTACAGTAGGTTCCGATACACAGTCTGGAAATGTTGCATGTTCTCCCTGATGATATACAGTGAGGCAGTGGTAAGGATACCTAACTAGCAGTAAACTGCAGTCACGGCACCTAGATGGCTGGGTGGAATTGGATATGTAGTGTCTCTTTTAAAGACAGTCCAAAATACCTATTttagagacaacagagaggagcaaggtaaaaacacacagagaaataTGCAGTACAAATTAATGAATAAATATTTGTGCATATACTTTTCTATAATGGATATATTAACATGGGATTTGTTTAATGTCCAAAAATATTTTCTTAATATTTCAAAATAAATATGGAATGGTAACAATGCATACTTGTATGATATCTAAATACATTCCTGATATTTTGTCAATTCTTTCTAAGGGGACTTAAGGTGGAATGAATAGCTTTAGGCCATTTACTTTGTTGTAAACATCCCCTGGATCGGAGTGTAGATAGATAGTAGTGTGTAGTTATGACTGACGAGCAGACTTCCACACTCCCCTACAGTAAAGTAAACAAGTTCAGTAAGGGCTATGAGATATCACTCTACACAGCAAAACCATCCCACATGGTGCTCAGCAACATCAAGAAATAGGATCCAAGCAAACTAgtgtaaaataaaatattaaaacatGTCTTCAAGAAACACATCATTTGGTTAACGGAAGAAATGAGAAAAAAACGTCAAATGACATTGTACAACTGCCCCAtagtaaaaacaacaacatgactTAACAGAACAGCAGGTTGGGAAAAAAACATTGTATCTTGGCTTCCCTTGCATTGTGTTTTGCCAGAATGACCTCATCATTGAACAATCAGATCTCTACTACTAAAAGGCATTCATATCGCCACTTTCCACTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAAAGCTTTCCTTAAGGCATTGACATCAAACCAAAACAAAATGATCATGCACAGTGAAATTTGCTGAATTAGTTCAGAGAAACTCCCAAAATGTCTTGTTTAGTAAACACTCACAAACTCCTACTGTACCTAGACATAGTCGTAGTTCGAAAAGCCAACACCAGATAAACATAAATAACATTTATATCGCTGCTGAAGCAATGTTCAACATAATTCATAATGAATGCACACACGTCCCCCGACTCCTGAACACTGGTCAGTGTAAAGGAGAGCGCTCCCAAATAGAAATAGTCACAACTCCGTACTAGGGTCAGTTCTAAAGACTTTCCCAGAAAGCAGTCCCAATGGAAAAAGACAAATGGAATAGCAAAGACATTGCAGTGAGTGTACCCAAGTGTATTCGACCGTGGAAACATCACAGTAATGGTGGTTTTGTCCTCTTGAGCGTAAACTCAAAACCTGGATATACCAGCTACAGTTTTGCAGTAGTGTTGTTGTATGACGGTAGTGTTGCATGTACAGTAAAAGGGTAAGCAAAACAAACAACGTCAATGTCAATCACAAATGATCAAAATCTAACCACTGTAGAGGCCCCACAACGTCAGGAAGTGGGGAATAACAATCACCCAATGAGATATGCAGTCTTCGATCACTCAGCCAGTCAGTCGACGCATTCTCTCGTCTTCATGGCTACATCCTGACCCTAGAATGCTGAAGTAGAACGTAGTCCTGATTGGATGCTGGGGGGGGATATTCTACATCTCCTCGTAGTCTACGTCTCCGGCGAGAAAAGACTCCAGGTCGTCAACCACGCCTCCGGCTTTCTTGGTCGACTTTgacttcttctttttcttctctttctcgtCCCCGCTGCCTGACTCCTCCTTTTTCTTCTGTTTGTGTCGTTTCTTGCTGCTTTTGTC

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417847 True 2298 lncRNA 0.39 1 11750128 11752425

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-2 NA coding upstream 148596 11601460 ~ 11601532 (+)
LOC110523192 plk2 coding upstream 236866 11507689 ~ 11513262 (+)
LOC110524952 NA coding upstream 242844 11502643 ~ 11507284 (+)
LOC110523188 pde4d coding upstream 331195 11026101 ~ 11418933 (+)
depdc1b depdc1b coding upstream 745487 10984720 ~ 11004641 (+)
phax phax coding downstream 51495 11803920 ~ 11808076 (+)
lmnb1 lmnb1 coding downstream 80484 11832909 ~ 11854832 (+)
LOC110523202 NA coding downstream 167313 11919738 ~ 11922926 (+)
megf10 megf10 coding downstream 194576 11947001 ~ 12051563 (+)
prrc1 prrc1 coding downstream 304527 12056952 ~ 12093392 (+)
G367631 NA non-coding upstream 157 11748474 ~ 11749971 (+)
G367628 NA non-coding upstream 4037 11745870 ~ 11746091 (+)
G367613 NA non-coding upstream 44915 11704911 ~ 11705213 (+)
G367565 NA non-coding upstream 52798 11697102 ~ 11697330 (+)
G367563 NA non-coding upstream 55489 11694420 ~ 11694639 (+)
G367632 NA non-coding downstream 220 11752645 ~ 11753051 (+)
G367633 NA non-coding downstream 1625 11754050 ~ 11754260 (+)
G367634 NA non-coding downstream 2950 11755375 ~ 11755807 (+)
G367635 LOC106571245 non-coding downstream 3989 11756414 ~ 11756660 (+)
G367636 NA non-coding downstream 6795 11759220 ~ 11759448 (+)
G366973 NA other upstream 321418 11425642 ~ 11428710 (+)
G366748 NA other upstream 772976 10976682 ~ 10977152 (+)
G365197 NA other upstream 1900974 9848703 ~ 9849154 (+)
G364850 NA other upstream 2520897 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 2904012 8775134 ~ 8849107 (+)
G367684 NA other downstream 125904 11878329 ~ 11880035 (+)
G368440 NA other downstream 1356271 13108696 ~ 13109134 (+)
G369763 NA other downstream 2012822 13765247 ~ 13769296 (+)
G370360 NA other downstream 2503378 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2568679 14321104 ~ 14325895 (+)

Expression


Co-expression Network