G368557


Basic Information

Item Value
gene id G368557
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12091347 ~ 12093391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU418893
CAGTATGAAAAAAATGGATATTTACTCTCCCCATGAAGGCACATTTAGGAGTTAAGAAAAGCCCAACACAGAAAATCACTGTTTTGTACATAAAACCATTTAAAAAGCAAAGAGTTTAGACAAAGTCCTAGTATTTCTCTGGTATAGTTGAATAACTATCTGACAAAAGTTGTTTACTCACCTCTTGATCTAGTGGTGTTGCATCCCACTACCATGGGACTTCCGTGTTTTGGACAACAGAATGTACTCCTGCCTCAGGCAGCAGCAACGAATAACAAATGGATTGCCTTCCAAACAAAACCTCAGAGGTCATATACAGCTTTGTGTTTTCTTGTTGCACTCTTCTGTTATCACTCgagtaaaaataaatacaaaaaagtgtttttcttGCAAGGGGTGCCTTCacacagtatagaacagaatggTAATGTTGGACAAACTAAAGAATCGACTTACGATAAACTGAGCTCCAATAAAATCACATAGACAAGTCATTTTCAATCAGGAAACACCTTCCAAGGAATCATTCCAATTCGTAGATCAAAGAATGTAATTTCACCCTTCTCCATTTGAAAATCATTGGCCCTCACTAACATGTAAAGTATGTGTACATGTAATAACCTATGTAGCGTTAATGTACAGACAACAATtgttacattaacacacacaacaacaaaaaagaacaAAACATTACAACTAATGGATTTTAAGGCCCTGACATCTTGGTGCACACATTATAGCTCATTCAGTCCAAAGCCTCCATTGAGTTACATAGGCTAAGTGTGAAATGAATGGACTTTTACGTAAATCCCAAGTTGACGTCAATGAGAGATGTGCATAAATATACGCTAAATGCAATGATAAATGTTAAGTTACATGCAATGATTTCAAGATAGCATTTAGCCTGCAGGTAATTCATACAGAAAAAAATATCCCCCCCAAGTGGTAGGGAGAAAGAAATGGAAGGTTGGTGGTTGACATACTACACCAACTAGCACTGGCTATACTCTCTAACAACAGGGGCGTCAAACATACGTGGTTTGAGTAAATGGCTGTGTTTATACAggaagcccaattctgatatttgcCCAAATATTGGCAAAAAAAAGCTGTACTGACAAAATCAATAACCTTTAAAATGACTAATACCAAAAAtgtgtagaaattataatggacctataaTGGAAATATAACCAATTTTCAGTGACGAACTCCGGACCTGGCAAAATGAGTTCCCTGCTCCAAAAACAGACAAAGCACTATTGCTCCCCATTTCCAAAACGCCTGCGTGTTCATCCAAAAGTAATACAACACCGCATTCTACATATTTACATGACTACAATTTGTTGAACAACACATTAAGTTAATTAGATCTCAGATATTTACCATCAAGGATCACAAATAATACTTTCTCAATAAAAGAGGGACAATCGACAAAATTCAAATAATCAATCATTACTTTAATGAGCTAGTTTGCTACGCTATCTCTAAAAAGGCATTTCTTTCTAGGCCTTAGCTGGGGGAAAAAAGTTGATTTAGAAATAAATGAATATTTCCTGTTTTTGAAGGAACAATCCACTTCCGTCATTCTCTCCATCCAGTTGGCACGTCAGATTGTTTCAACCCATAAAACCTTGCTACaaacaaataataaaacataatGAAAAAATTGCATTTGGCTTTTTGCCCAATCAGGACAGACAGCTAGAAGCAGAGTAGGAATCCCATTTGGTGAAACGGCTGCCGCTTCTGCCCAACCCCCTTTTCCCTCCTCTGGTTCTCCCTCCCCCTAGTTGTCAGTTTAAAGACATGGTGCCACCTcacattgtcctgggtggaagctGCTGCTTGTACATGCCCGCCAGGGCCTTGGCAGCGCTCTGGATCATCTGGCGGCGGGACATGCCCGTGAAGGCCTGGTGCCAGTCCGTCCGCAACACATTGGGTACGTTGCGCTCCAGCACCTCGCCCACCGTCACCAGTAGGCCCGACCAGCGAAGGCTGTAGTCCGGCGGGGTCAGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU418893 True 2023 lncRNA 0.40 2 12091347 12093391

Neighbor

gene id symbol gene type direction distance location
c5h5orf63 cssa01h5orf63 coding downstream 206772 11880306 ~ 11884575 (-)
marchf3 march3 coding downstream 213346 11856300 ~ 11878001 (-)
LOC110523198 LOC106571668 coding downstream 280330 11808333 ~ 11811017 (-)
aldh7a1 aldh7a1 coding downstream 296947 11787253 ~ 11794400 (-)
LOC110523196 LOC106571245 coding downstream 304105 11748457 ~ 11787242 (-)
LOC110523205 LOC106603399 coding upstream 23529 12116920 ~ 12119545 (-)
LOC110523212 LOC106571134 coding upstream 172602 12265993 ~ 12281595 (-)
LOC110523211 LOC106571125 coding upstream 190764 12284155 ~ 12289326 (-)
LOC110523214 NA coding upstream 201498 12294889 ~ 12297815 (-)
LOC110523209 LOC106571116 coding upstream 209437 12302828 ~ 12313482 (-)
G368577 NA non-coding downstream 33362 12057035 ~ 12057985 (-)
G368541 NA non-coding downstream 96163 11994105 ~ 11995184 (-)
G367755 NA non-coding downstream 260785 11830363 ~ 11830562 (-)
G367728 NA non-coding downstream 321601 11769542 ~ 11769746 (-)
G368606 NA non-coding upstream 31822 12125213 ~ 12126922 (-)
G368634 NA non-coding upstream 69164 12162555 ~ 12162829 (-)
G368635 NA non-coding upstream 69881 12163272 ~ 12163520 (-)
G368647 NA non-coding upstream 82054 12175445 ~ 12175806 (-)
G368584 nkcc1a non-coding upstream 87434 12180825 ~ 12181856 (-)
G365752 NA other downstream 2901249 9189669 ~ 9190098 (-)
G364754 NA other downstream 3040639 9047542 ~ 9099000 (-)
G364322 NA other downstream 3787164 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5365367 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 5536632 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 40661 12134052 ~ 12136790 (-)
G368921 NA other upstream 612175 12705566 ~ 12706092 (-)
G370333 NA other upstream 2113799 14207190 ~ 14208705 (-)
G370635 NA other upstream 2333947 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 2899737 14988147 ~ 14995197 (-)

Expression


Co-expression Network