G368612 (ctxn3)


Basic Information

Item Value
gene id G368612
gene name ctxn3
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12134052 ~ 12136790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU418958
TGGAAACACTTTATTCATCGCCATTCTATCACATTGAATGGGAAGGggttgtttttacattttaaaggTTCTGTTGCTCCACAAGATTCTGACTGACCACTACATGCAATTGCCGCAAAATCATCACTATAACCCTGCATATTTACATAGACTTTACATAGGCTGATCTAGTGACTGAGTTATGAGGTATACTTCACAGATTGAAAAGGGCATTCCTTCCAATGTCAGTATTGAAAAAGGAGTGAGTGTTATTTGAACAGTACCCTGGTCACTGCAACACACTCAGGTGAGACACAGTTAGTGGACATAGCCTGCCTTCTGTAACAGAAGTGATTTTTTACCAACGACACATTCATTTGATTCGAAGCAAGTATACTCTGGATGTCACAAGAGAGCAAATATCTGTTGTACAACGTATTCTTGGGTTTGTGGACTACCGGGCCAGGATTTAATTACTTGgtgacactttatttggatagtcccctATGTTCAAACTCTAAGCAATCTATCATTTTGATTTATCAAGTGTCAACTGCTCTGAATCCCATGCAAGATCCAACAACTACATTTACTAAACATACTTTCAGCAACTAAGTTGCATGCAGTTGATTATAAATGAAAGTGACAGCTTCAACTGTAGAGCCCTATCCAAACACACTGTTGTTGCCACCTACAGTATTTCATTACATTTTACACATAATCCCCACATTTTATAAAGTGTCAAAGTGTTAGTCCACTCAAAAATATAAGTTAGTCAGATATTTGAAGAAAAAACAATTTACACAACACATGTACACATCTTGATATTAGACTACTTTTGAGGTCTGAAAACAAAGAAGAGGACCGTACGGGGATCTGCAGTGGGGACAGCAGGTAATCTTTAGGAACAGGTATCTGATTGATAGGAACACACTTGTGTCACAGGTAGGATCTGAACCCAGGTTTCCTATAGGAGAAACCACATCTGATAGTTTTAATATATTATTGCGTTGACTTGAAGTGcttagatatagatagatagatagatagatagatagatagatagatagatagatagatagatataataTGTACATTTATGTCTCCCTTCTAGCCATCTGCTGACTGGGTCAAATGATATCAGCTATTATCTCAATCTATACCAACAATATCAAATTATTGAGCTATAAAAACAAGATGAGGAATGCTTGTTTTTGGCCATTGAAAATAATCTCATCCTAAATCGAATTCCCTGATTGTGTAAATACGTCCTTCTATAATAGATTAACATAAATCAATTATGAGCAATGACTATAAAATGACAAAACGATCACCATAATAATATGTTAGGTCAGCATTCAGCATTTAACATTCTGAACACACATTTCTGGGACATACATATATCAACAACAACACTCCTCATGGACAGTAGAAGATTTCAAATGTTCCTTTAGTACAAGGTTGAATAACTTAGCAGCCTACGACAGCACAGGTTGACATAGCGTTGGCATAGTTCTTGACTCGGATGGTGCGGTATTATGAGAAGGAGGGGTAAAATAGTTTAGTTCTTGACTCGGATGGTGCGGTATTATGAGAAGGAAGGGTGAAATAGTTTAGTTCTTGACTCGGATGGTGAGGTATTACGAGGAGGAGGGTTGAAATAGTTTAGTTCTTGACTCGGATGGTGAGGTATTACGAGGAGGAGGGTTGAAATAGTTTATTTAGTTCTTGACTCGGATGGTGAGGTATTACGAGGAGGAGGGTTGAAATAGTTTATTTAGTTCTTGACTCGGATGGTGAGATATTACGAGGAGGAGGGTTGAAATAGCACTGACATTGTTGTCAACTTGAACGGTGAGGAGGACACGGAGGAGGATGAGAACTACCCTGTAGGAGTGAGGCACTGAAGGAGCCCCAGGTGGCCtcttgtgtcagtgtgtgtgagtgacattAGCTGTCTACGGTGTAAACAAGTGGGAGAAAGTGAACCCAGAAGGATGCAAccacactgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttaaacCGGCTCTTCTCTTGCCCATGCATACTGTGAATCCAGGAGGATACaaccacatgtgtgtgtgtgtattgtgtgtgtgtatttcatgaCATACAATGCATGTTGGTCTGTGTCCTTACACCACAGCGTGTGATCAAACTGACCATTCTCTCTAGCCCATCCAGACCGTCAGCCAAGGTGAATGCAGCCATTCTGcatattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagtatacagtacatggaCGCCCAACCCCCTATGCCAGTGTATAGTCGAATTGGCCCTTCTCCAGCCCGTCCAGGCCGTCTGCCCAAGTGGAGGTGGGCATGCTGCGGTAGGGGTCCAGCAGGATGCGAAAGCACCGCACGATTAGGATGAGGAGGACACCGAAGAGGAAGAGGACCAGGGCGAAGGTGGTCTTCTGCTCCAGGGTCATGGCGGCGACAAGGGCAGTAGCGGCCACTGATGAGGAAGAGGACGAGGAGAGGCGCTGTCCTCCGGCAGAGtgcagcagggagagaggagaggtgaagggcTCACCCTCCGTCATCcaggaggagaggtgctgggcgGCTAGGCTACGGGACTCCCACAGGGGGTGCTCTGGCATCCTCATGAagccagccccatccctcatccccTCC

Function

symbol description
ctxn3 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
cortexin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU418958 True 2701 TUCP 0.43 2 12134052 12136790

Neighbor

gene id symbol gene type direction distance location
LOC110523205 LOC106603399 coding downstream 14507 12116920 ~ 12119545 (-)
c5h5orf63 cssa01h5orf63 coding downstream 249477 11880306 ~ 11884575 (-)
marchf3 march3 coding downstream 256051 11856300 ~ 11878001 (-)
LOC110523198 LOC106571668 coding downstream 323035 11808333 ~ 11811017 (-)
aldh7a1 aldh7a1 coding downstream 339652 11787253 ~ 11794400 (-)
LOC110523212 LOC106571134 coding upstream 129203 12265993 ~ 12281595 (-)
LOC110523211 LOC106571125 coding upstream 147365 12284155 ~ 12289326 (-)
LOC110523214 NA coding upstream 158099 12294889 ~ 12297815 (-)
LOC110523209 LOC106571116 coding upstream 166038 12302828 ~ 12313482 (-)
LOC110523210 LOC106571086 coding upstream 187818 12324608 ~ 12340647 (-)
G368606 NA non-coding downstream 7130 12125213 ~ 12126922 (-)
G368557 NA non-coding downstream 40661 12091347 ~ 12093391 (-)
G368577 NA non-coding downstream 76067 12057035 ~ 12057985 (-)
G368541 NA non-coding downstream 138868 11994105 ~ 11995184 (-)
G368634 NA non-coding upstream 25765 12162555 ~ 12162829 (-)
G368635 NA non-coding upstream 26482 12163272 ~ 12163520 (-)
G368647 NA non-coding upstream 38655 12175445 ~ 12175806 (-)
G368584 nkcc1a non-coding upstream 44035 12180825 ~ 12181856 (-)
G368656 NA non-coding upstream 51369 12188159 ~ 12188502 (-)
G365752 NA other downstream 2943954 9189669 ~ 9190098 (-)
G364754 NA other downstream 3083344 9047542 ~ 9099000 (-)
G364322 NA other downstream 3829869 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5408072 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 5579337 6543675 ~ 6554715 (-)
G368921 NA other upstream 568776 12705566 ~ 12706092 (-)
G370333 NA other upstream 2070400 14207190 ~ 14208705 (-)
G370635 NA other upstream 2290548 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 2856338 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2986685 15123475 ~ 15124789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002006 ctxn3 coding NC_007121.7 CM002894.2 16188761 ~ 16192613 (+)