G367977


Basic Information

Item Value
gene id G367977
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12242942 ~ 12243209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU418237
AACTTTGGCGTTTTGTGATGACATTCGAGGGTCTGATACTCTGCCAAAGTGAACTAGGTTTCTTGTGAAATCACAATGTGAACGTGCTTGAGAAAGAGGTCAGGATGTAAGAATTCTGAAAGCAGTTTATCGCCACACGCCCTATCCCCCCTAGATCTCTCAAAGGCCTCCCTTATATCTCGCCAGCCAGTCACTAGGATACACTGAGTGGGCGGCCCTGTAAGTCGCCCGACTCAGAGAGGAAGTGGCCTCTGACCCCGTGACCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU418237 True 268 lncRNA 0.51 1 12242942 12243209

Neighbor

gene id symbol gene type direction distance location
LOC110523206 ctxn3 coding upstream 108374 12113703 ~ 12134568 (+)
prrc1 prrc1 coding upstream 149550 12056952 ~ 12093392 (+)
megf10 megf10 coding upstream 191379 11947001 ~ 12051563 (+)
LOC110523202 NA coding upstream 320016 11919738 ~ 11922926 (+)
lmnb1 lmnb1 coding upstream 388110 11832909 ~ 11854832 (+)
LOC110523213 LOC106571108 coding downstream 73899 12317108 ~ 12321576 (+)
LOC110523216 LOC106570966 coding downstream 127701 12370910 ~ 12560586 (+)
nr5a1b LOC106570956 coding downstream 331370 12574579 ~ 12592217 (+)
psmb7 psmb7 coding downstream 383863 12627072 ~ 12647406 (+)
LOC110523223 LOC106570883 coding downstream 559623 12802832 ~ 12978339 (+)
G367975 NA non-coding upstream 5633 12237047 ~ 12237309 (+)
G367969 NA non-coding upstream 16869 12225851 ~ 12226073 (+)
G367966 NA non-coding upstream 20849 12221861 ~ 12222093 (+)
G367960 NA non-coding upstream 30252 12212475 ~ 12212690 (+)
G367958 NA non-coding upstream 33071 12209661 ~ 12209871 (+)
slc12a2 nkcc1a non-coding downstream 15137 12180768 ~ 12261242 (+)
G367937 NA non-coding downstream 22163 12265372 ~ 12266052 (+)
G367987 LOC106571116 non-coding downstream 41030 12284239 ~ 12343442 (+)
G368039 NA non-coding downstream 125569 12368778 ~ 12369051 (+)
G368124 NA non-coding downstream 268550 12511759 ~ 12512508 (+)
G367684 NA other upstream 362907 11878329 ~ 11880035 (+)
G366973 NA other upstream 814232 11425642 ~ 11428710 (+)
G366748 NA other upstream 1265790 10976682 ~ 10977152 (+)
G365197 NA other upstream 2393788 9848703 ~ 9849154 (+)
G364850 NA other upstream 3013711 9228838 ~ 9229231 (+)
G368440 NA other downstream 865487 13108696 ~ 13109134 (+)
G369763 NA other downstream 1522038 13765247 ~ 13769296 (+)
G370360 NA other downstream 2012594 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2077895 14321104 ~ 14325895 (+)
G370414 NA other downstream 2124463 14367672 ~ 14368161 (+)

Expression


Co-expression Network