G368704


Basic Information

Item Value
gene id G368704
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12258015 ~ 12261235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU419052
ACGATTGAttcatttaatttatttattgcaATAGATGTACAAAGTATTGGTAACCTTAAATGTTAAAATGTTAGAAAAAAAACATCTGTGACAGTTAACAGTACAGTATATCAAACATTACTGTTTCAACCAACTAGGTAGATCACATCTACCCAGATGGAAGAGCAGGAGAAAACATCTTTAAACTGCTTTGTCAACACAACTTTTCATTCAAAGGCATATAAAAGATAAATGTCCAGACTGAAAAAGAGAAactgattttttgttgttgatcaaAATGCAAAAATTAACATGCAAATGAATTTAAAACAGAAATGAAAAAAACTTGGAGAATTCTAaactaaaataaatatatatcttTCTCCATATTAACTTGCCATTAATATTCTACTCCCTTAATTTACCTAGTTAGACTACTTTTATTTACATGTTAGTTTTTCTTCGAGTTACAGTGTGAACTAAGGGTTCTGAGTCATGAGAATTTTTGACCAATGCTTTTCTTCATCCattgtcatggctcacaacaactCAAGACAGATGGAGGGGgtgaggaagaagaggggggggCTTTGGCTACAAATACAAAGAGGATGAAGAAGTCTCAACATGGCGTGGATACCAGTTGCAGGTGACATGTTTTGGTCTCTTGGATAGAGCACAGTAGTGTCAAGTTTCTGCTAAATAATGACATTGAGAGGATGTTACAGTATTACACTCCTCACAcatcaataaaaataaagaaCGCACCTTATTTGGTTGTGACATATCGATAACaagttttttttgtatttttccgTGACATCAATGACAAAGAGCCCCGCACGGTTGGATTGATACATCTTTTCTTATTcatatatttaaatataaaaTGTAGAGTAACCCGTGTTTTTGTTTGTAACATTGTCGCTTTGTAACAATAACTGAGGGTTGAGTGCGTTACACACCAGTACACAGAACAGATCTTGGTTAGTAAGATTGTACCATCTGGCTTCTAAAAAGATGTACAATCCCCCACCCATTAAAAAGAAGAAGCAGAAAAGAAAGAAGATAATGACATGCTTTGCACATTTCAGAGATATTTTTATACactagtgtgtatatatatatatatatatacacacatatgagagagattatatatatatagtcattCCTAATCACATGGCGCAGTCATGGTCTAGATAAAGAACACAGCATGGGGAGATGCAGTCGTGTGGGTGGTAATAGTACAATGAACCTGAACTGCAAAGCACACTGCATGTGGATTTCCATGTGGGACTGAAATCTAAAAAAACCTGTAGCTTGTAGCAAAAACTCAACATGGCAGTAGTTGAAAATAAAAGCAACAGAAAGAGACCATCCCTTCATCAACTCCCACTTTAGTGTTAATCAGATTTACATTCAACTGACCCAAGCCTCCTGCCCctccaaaaaacaaaaacaactttaATTGCATAAAATGATGAGAACTAGGTAAGAGCGGGGCAATGACGTGGTTGGCCTTAAGTCTACAATTTTTACTCTCCCGGAAACAATGGCAAAGTGGGCCGACAATAGGTTTAAGGACCAGCCTAAATAGTCCAAAAATGAACTGAGGGACAGTGGAACCTTTCAAATAAACCAGGTATGGGCTTTTATAACAAGTATTGATTACAGTGCATCTGCATAGAGGCATGTATCAGTTCCCTCTTGAAACATGCTAATCCATAGCTTTTACCTACAATTTCCCCTCTTTTGAACACGGAACTAACTCAAACTCTGAACAAAGACACTCAGCAAAGTTAAGGCAAAGTCTTAATTCGGTTGTAAGGGCTAGACCGGTTCCTTCGTAGTCACTCCAATGTGGGGGACCCGAGGGGCAGAGTCCTAACTTGAGATATGAATTAACCAACTCAGACTTTGAAGTCTCCTTCAGACATCAACACACAAATTCAGCAAAAAAGTTGGAGTAAAATTGGAGCGTCTCAAATTAGGATTCAGCCCATAGATTTCACTATGAGGACAGACGTCAATGAGGGGAACCTACTCAAATCCAACGGGGACGTGGACGAAGAACTCAGCCGAGGGTTTTGCTGCTTTTGGTTGAAACACTTGTTCGCGTTAGCAGCTTTTGAGAGACAACTGGCATGATGAGGCTAATCCGAAGCTAAACCCACTTCTAGTCATTTCTGACAGCATGGTAGTAAGACCCCTGGGACCTTCCAAGTGTAGACCTGCAGATATCTTTCTGTTAAGAGACCATTCTTGGGCATCAACCAAATCAACTTTCAGAGTTGAAGTTGATTGCGTCTACTATAAAGTAGGTAGAGGGTACTGCACTAAGAACACTGTTTAATTTCCACAGCTTAAAGGAAGACAAATACAAATGTGGAGTAAAATGAAATCAGAGGTCAGAAAACAATAGGAAACCGTTTAGGGAGGAGAAATACACACTAGAAAGCTTTTTTTTCCATCAAGTGGAGACTCTTTGCTAACCTCCTACAATCCACTCGCATAAAAACATTCCTCAAAAAAACATTAAAACTCAATAACAAAATAACTTATCCATCTATATTCTTCATACCATTCAATCTGGGTAGAGCGATTCATAATTTAATTCCTTTGATTCCAACTGGAAGGCACATCCATAAGGCTATAAAAGGAGTAGCAAAGCATTCGGTATGGTTCTCTCCAACACAAGAAAAGGAAAAATTAGAGGGTGATTATTGCTGCTTTGAAAAAAGCAAAAATGATCTAACTTAAAAACGTGACATCGAGAAGAATctgaataataacaataatgataataacGTTGTGTGAATCACATGAACAGATGCTTTCAAGCCAGAGGAAATCAATTTTGAGTAAATTAAAATTGTTCACTTCTTTCGTGTGCTGTGTACAATTTGAAGAGTAGTGCGGACCCCCTCCCCCcgaccgaccccccccccccttcacataAGAGGCTGGACCCCCAGAgcaacaccatatcctttattatcatcattattatcaatGGCTACGGTTTCTACCTtcattggagtgtgtgtgtgtctcttaggGCACTGGGATAGGAGGTGTGGGCGGTCCCAGAGGCGGCGTGTGTGTGATTTTTAAGAGTAGAAGGTGAGGACGCTCTGGTGGTTGCCTCGTACCaggaggaggggaggcaggtcCTTGGACAGAGTCTCCAACCAGGACATGTAGAGAGCACTGGATACGGCTCCCTTTCTGGCCAGGGG
>TU419053
GCGCAGTCATGGTCTAGATAAAGAACACAGCATGGGGAGATGCAGTCGTGTGGGTGGTAATAGTACAATGAACCTGAACTGCAAAGCACACTGCATGTGGATTTCCATGTGGGACTGAAATCTAAAAAAACCTGTAGCTTGTAGCAAAAACTCAACATGGCAGTAGTTGAAAATAAAAGCAACAGAAAGAGACCATCCCTTCATCAACTCCCACTTTAGTGTTAATCAGATTTACATTCAACTGACCCAAGCCTCCTGCCCctccaaaaaacaaaaacaactttaATTGCATAAAATGATGAGAACTAGGTAAGAGCGGGGCAATGACGTGGTTGGCCTTAAGTCTACAATTTTTACTCTCCCGGAAACAATGGCAAAGTGGGCCGACAATAGGTTTAAGGACCAGCCTAAATAGTCCAAAAATGAACTGAGGGACAGTGGAACCTTTCAAATAAACCAGGTATGGGCTTTTATAACAAGTATTGATTACAGTGCATCTGCATAGAGGCATGTATCAGTTCCCTCTTGAAACATGCTAATCCATAGCTTTTACCTACAATTTCCCCTCTTTTGAACACGGAACTAACTCAAACTCTGAACAAAGACACTCAGCAAAGTTAAGGCAAAGTCTTAATTCGGTTGTAAGGGCTAGACCGGTTCCTTCGTAGTCACTCCAATGTGGGGGACCCGAGGGGCAGAGTCCTAACTTGAGATATGAATTAACCAACTCAGACTTTGAAGTCTCCTTCAGACATCAACACACAAATTCAGCAAAAAAGTTGGAGTAAAATTGGAGCGTCTCAAATTAGGATTCAGCCCATAGATTTCACTATGAGGACAGACGTCAATGAGGGGAACCTACTCAAATCCAACGGGGACGTGGACGAAGAACTCAGCCGAGGGTTTTGCTGCTTTTGGTTGAAACACTTGTTCGCGTTAGCAGCTTTTGAGAGACAACTGGCATGATGAGGCTAATCCGAAGCTAAACCCACTTCTAGTCATTTCTGACAGCATGGTAGTAAGACCCCTGGGACCTTCCAAGTGTAGACCTGCAGATATCTTTCTGTTAAGAGACCATTCTTGGGCATCAACCAAATCAACTTTCAGAGTTGAAGTTGATTGCGTCTACTATAAAGTAGGTAGAGGGTACTGCACTAAGAACACTGTTTAATTTCCACAGCTTAAAGGAAGACAAATACAAATGTGGAGTAAAATGAAATCAGAGGTCAGAAAACAATAGGAAACCGTTTAGGGAGGAGAAATACACACTAGAAAGCTTTTTTTTCCATCAAGTGGAGACTCTTTGCTAACCTCCTACAATCCACTCGCATAAAAACATTCCTCAAAAAAACATTAAAACTCAATAACAAAATAACTTATCCATCTATATTCTTCATACCATTCAATCTGGGTAGAGCGATTCATAATTTAATTCCTTTGATTCCAACTGGAAGGCACATCCATAAGGCTATAAAAGGAGTAGCAAAGCATTCGGTATGGTTCTCTCCAACACAAGAAAAGGAAAAATTAGAGGGTGATTATTGCTGCTTTGAAAAAAGCAAAAATGATCTAACTTAAAAACGTGACATCGAGAAGAATctgaataataacaataatgataataacGTTGTGTGAATCACATGAACAGATGCTTTCAAGCCAGAGGAAATCAATTTTGAGTAAATTAAAATTGTTCACTTCTTTCGTGTGCTGTGTACAATTTGAAGAGTAGTGCGGACCCCCTCCCCCcgaccgaccccccccccccttcacataAGAGGCTGGACCCCCAGAgcaacaccatatcctttattatcatcattattatcaatGGCTACGGTTTCTACCTtcattggagtgtgtgtgtgtctcttaggGCACTGGGATAGGAGGTGTGGGCGGTCCCAGAGGCGGCGTGTGTGTGATTTTTAAGAGTAGAAGGTGAGGACGCTCTGGTGGTTGCCTCGTACCaggaggaggggaggcaggtcCTTGGACAGAGTCTCCAACCAGGACATGTAGAGAGCACTGGATACGGCTCCCTTTCTGGCCAGGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU419052 False 3221 lncRNA 0.39 1 12258015 12261235
TU419053 True 2057 lncRNA 0.43 1 12258015 12260071

Neighbor

gene id symbol gene type direction distance location
LOC110523205 LOC106603399 coding downstream 138470 12116920 ~ 12119545 (-)
c5h5orf63 cssa01h5orf63 coding downstream 373440 11880306 ~ 11884575 (-)
marchf3 march3 coding downstream 380014 11856300 ~ 11878001 (-)
LOC110523198 LOC106571668 coding downstream 446998 11808333 ~ 11811017 (-)
aldh7a1 aldh7a1 coding downstream 463615 11787253 ~ 11794400 (-)
LOC110523212 LOC106571134 coding upstream 4758 12265993 ~ 12281595 (-)
LOC110523211 LOC106571125 coding upstream 22920 12284155 ~ 12289326 (-)
LOC110523214 NA coding upstream 33654 12294889 ~ 12297815 (-)
LOC110523209 LOC106571116 coding upstream 41593 12302828 ~ 12313482 (-)
LOC110523210 LOC106571086 coding upstream 63373 12324608 ~ 12340647 (-)
G368714 NA non-coding downstream 4582 12252379 ~ 12253433 (-)
G368715 NA non-coding downstream 10034 12247147 ~ 12247981 (-)
G368710 NA non-coding downstream 13805 12241305 ~ 12244210 (-)
G368719 NA non-coding downstream 16776 12240828 ~ 12241239 (-)
G368727 NA non-coding downstream 17500 12240190 ~ 12240515 (-)
G368854 psmb7 non-coding upstream 384746 12645981 ~ 12647401 (-)
G368910 NA non-coding upstream 416457 12677692 ~ 12684042 (-)
G368976 NA non-coding upstream 547532 12808767 ~ 12809226 (-)
G369075 NA non-coding upstream 656480 12917715 ~ 12918632 (-)
G368612 ctxn3 other downstream 121225 12134052 ~ 12136790 (-)
G365752 NA other downstream 3067917 9189669 ~ 9190098 (-)
G364754 NA other downstream 3207307 9047542 ~ 9099000 (-)
G364322 NA other downstream 3953832 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5532035 6562531 ~ 6726634 (-)
G368921 NA other upstream 444331 12705566 ~ 12706092 (-)
G370333 NA other upstream 1945955 14207190 ~ 14208705 (-)
G370635 NA other upstream 2166103 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 2731893 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2862240 15123475 ~ 15124789 (-)

Expression


Co-expression Network