Gene
RNA
| Item | Value |
|---|---|
| gene id | G368126 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 12515015 ~ 12519164 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU418419 | False | 434 | lncRNA | 0.38 | 3 | 12515015 | 12519164 |
| TU418418 | True | 349 | lncRNA | 0.37 | 2 | 12516412 | 12518276 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523213 | LOC106571108 | coding | upstream | 193439 | 12317108 ~ 12321576 (+) |
| slc12a2 | nkcc1a | coding | upstream | 253773 | 12180768 ~ 12261242 (+) |
| LOC110523206 | ctxn3 | coding | upstream | 380447 | 12113703 ~ 12134568 (+) |
| prrc1 | prrc1 | coding | upstream | 421623 | 12056952 ~ 12093392 (+) |
| megf10 | megf10 | coding | upstream | 463452 | 11947001 ~ 12051563 (+) |
| nr5a1b | LOC106570956 | coding | downstream | 55415 | 12574579 ~ 12592217 (+) |
| psmb7 | psmb7 | coding | downstream | 107908 | 12627072 ~ 12647406 (+) |
| LOC110523223 | LOC106570883 | coding | downstream | 283668 | 12802832 ~ 12978339 (+) |
| ptpa | ptpa | coding | downstream | 570563 | 13089727 ~ 13107713 (+) |
| ntmt1 | ntmt1 | coding | downstream | 1020806 | 13539970 ~ 13543920 (+) |
| G368124 | NA | non-coding | upstream | 2507 | 12511759 ~ 12512508 (+) |
| G368039 | NA | non-coding | upstream | 145964 | 12368778 ~ 12369051 (+) |
| G367987 | LOC106571116 | non-coding | upstream | 171573 | 12284239 ~ 12343442 (+) |
| G367937 | NA | non-coding | upstream | 248963 | 12265372 ~ 12266052 (+) |
| G368216 | NA | non-coding | downstream | 161077 | 12680241 ~ 12683744 (+) |
| G368281 | NA | non-coding | downstream | 263076 | 12782240 ~ 12784546 (+) |
| G368355 | NA | non-coding | downstream | 385006 | 12904170 ~ 12904418 (+) |
| G368356 | NA | non-coding | downstream | 385743 | 12904907 ~ 12905339 (+) |
| G368387 | NA | non-coding | downstream | 445886 | 12965050 ~ 12970896 (+) |
| G367684 | NA | other | upstream | 634980 | 11878329 ~ 11880035 (+) |
| G366973 | NA | other | upstream | 1086305 | 11425642 ~ 11428710 (+) |
| G366748 | NA | other | upstream | 1537863 | 10976682 ~ 10977152 (+) |
| G365197 | NA | other | upstream | 2665861 | 9848703 ~ 9849154 (+) |
| G364850 | NA | other | upstream | 3285784 | 9228838 ~ 9229231 (+) |
| G368440 | NA | other | downstream | 589532 | 13108696 ~ 13109134 (+) |
| G369763 | NA | other | downstream | 1246083 | 13765247 ~ 13769296 (+) |
| G370360 | NA | other | downstream | 1736639 | 14255803 ~ 14259133 (+) |
| G370382 | smarcb1 | other | downstream | 1801940 | 14321104 ~ 14325895 (+) |
| G370414 | NA | other | downstream | 1848508 | 14367672 ~ 14368161 (+) |
