G368281


Basic Information

Item Value
gene id G368281
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12782240 ~ 12784546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU418588
TTTTGAAAGAACTGAAGGCTTAAGTACATCAAAAGGGGGCAACTGTACAAGAATGGaaggacaaacaaacaaactaaagACTGTGTAGTTAAAGGGATGTTGAATCCCAACAGCAGCTCTCCATGCATACAAGGATAAAGATAAGGTAAGAGCACCATCCTCATCCATAGGTAAAGGTAGTCACAGTCAAAAGGAAGGCAGCTTGATTCTCCATATCAGAAACACTCCTAGTCCTACCAGCTTCTAGTAGGCACCAAACAGGAAAACAACAGTCCAAAACGAGGAGGTACtacttgaatttgtccaataagaaacgctcatTTACGTTTTCCAttacaaaacgttttgctactGTGTGTCcgaatgaacacgacccaggtaaAGTTGGTTTATTTGCCAACCACACAAATCCCTGATTAGTTTCTCTGTACCAAAACCAATATTCAGACAGGTCCCCACAAGGAACAATTTTGTGGGGACAATTTCAATCAACCATGTTTTGTGCGAACAATTCCAAATAAGTATTTAGAAGTGGTCTTTAAGATTTTTTTAGATTAGGGGTGTAATTGTTAGATGTACCCATAAAGCATCTCAGTTCTAAGCACATTTCTTATATGTTATATCCTACATTGTGGGGACTTTGAGAATCAAAATCAGAGTGCTGGGTTTCAGCAGTAAGAACATAGAAAGACCTTCAGACTGAGGtaagtatggtgtgtgtgtgtgtgtgtgtgtgcgcgcttgTGAGTGTGCATGACTCCCCTCTTTGATGTGTAGAAGTGCATTTGGTACAATATACTGTAGAAGTGTATCTGGTACACTATACTGATATAAACTCTTATGTAGTGACGAATGAGCCAATATTCAAATAGACCGATAATATCTCAACATGAAAAGTTCATCCATATGTTACAgctatcaattcataaaccaaaCAGTGTGATGCTGGAAAATAGTTAGATATGTTGTAGCTACTTGTGTTGTGTATTCAAATGCGGACTGTAAAATAGTATCATTGCAATTCCATCAAGCAACGAGTCAGATATCAATATACATCATATCTCATTTCCGCATAGGACAGTTTATTGTTACAAAATATCAAAGTTGTAACCAACTATTACTGGTGTGTACTGCAAGCAATGACTGAGTCTAAAAGATAATGACCATGATATCtttatattaactttatcaaTGTAATTCTAATTCTCATCAATGCTATTTCTATTTCATCGATCAGTCCTCACTGTGTGCAGAGTGAATTGTAAAATAGAATTGCTTTCATTGCCATGTTGTAAGCAAACGTGGTTTGTCAGTGGGTCACCCATCCTTCAACCAAATCTTTCAAGAAATATGCCACCTAGATCAGACATCTATCCGATCAGGGATTCCTCAGTGTGATAAAATATATAAGGCACGCTAGAGTCTTCCGGATAACCTTGCTACAGTACTTTGTATCTGCATTTTACACTCTCCAATGTTTTTTCCAAATACATTTTCAGTTTCACAGTCCTTTCCCattgtctttttatttttttatatatttaaaaaaaaaaatctctaccTAGAAACAGAGTGGTCGGGGTGGTGGAGTGAGAATCTACATCTCGGTAGTATCAGTCAGCCAACGTGGAAAGGAAACAAAGATGAAAACAGAAAAAGTATCTTCAGCTCTTGATGAAATCAAGCCGACCGCTCTGTAAGGCTTTAGTTGCTACTCATACAAAGACTAGAAATAGACGGGGCAGTAATCTGAGGTCCACGGGGAATATCATGTATTTAAgtgtctctctcttcagtctcttAGTCTTTGAGTGACCTGGTGTGGTGTTGGATGGGTTTAGGGAGGGGTGGGGTGGTGTGGGATCGGTGACCTCAGAAGAGGTTGGTAAGTGTGGTCTGGGATGGGGTAGGTAATATCAGAAAAGGGTGGTAAGGGTGGTTATTTGATGGGGTGGGGTCGGTGACATCAGAATAGGCTGGTAAGGGTGGTCTGCGATGGGATGGGGTGGTGTTGGTAACATCAGAAGAGGCTGGTAAGGGTGGTCTGGGAAGGACTCATACTCATGGAGTCGTGGGGGTCCATGCCCCCCGGCACGGCGGTCAGTAGAGGGTTAACCGACGGAATAGAGGGGCTTGTCAGGTCCGTGAGGGTGGTGTGGGTGCTAGAAGGACTCATTGAGGCGTTGGAGAGCTCGGAGTGGGGGCCCGAAGGCGACCCCCCTGGTAGAGTGGACCCGTCCGACACCTTGTCCATCCCTGTGCTCTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU418588 True 2269 lncRNA 0.42 2 12782240 12784546

Neighbor

gene id symbol gene type direction distance location
psmb7 psmb7 coding upstream 134834 12627072 ~ 12647406 (+)
nr5a1b LOC106570956 coding upstream 190023 12574579 ~ 12592217 (+)
LOC110523216 LOC106570966 coding upstream 221654 12370910 ~ 12560586 (+)
LOC110523213 LOC106571108 coding upstream 460664 12317108 ~ 12321576 (+)
slc12a2 nkcc1a coding upstream 520998 12180768 ~ 12261242 (+)
LOC110523223 LOC106570883 coding downstream 18286 12802832 ~ 12978339 (+)
ptpa ptpa coding downstream 305181 13089727 ~ 13107713 (+)
ntmt1 ntmt1 coding downstream 755424 13539970 ~ 13543920 (+)
fkbp15a fkbp15 coding downstream 773208 13557754 ~ 13582939 (+)
rpl12 rpl12 coding downstream 818663 13603209 ~ 13606051 (+)
G368216 NA non-coding upstream 98496 12680241 ~ 12683744 (+)
G368126 NA non-coding upstream 263076 12515015 ~ 12519164 (+)
G368124 NA non-coding upstream 269732 12511759 ~ 12512508 (+)
G368039 NA non-coding upstream 413189 12368778 ~ 12369051 (+)
G367987 LOC106571116 non-coding upstream 438798 12284239 ~ 12343442 (+)
G368355 NA non-coding downstream 119624 12904170 ~ 12904418 (+)
G368356 NA non-coding downstream 120361 12904907 ~ 12905339 (+)
G368387 NA non-coding downstream 180504 12965050 ~ 12970896 (+)
G368413 NA non-coding downstream 250226 13034772 ~ 13034998 (+)
G368422 NA non-coding downstream 267961 13052507 ~ 13052933 (+)
G367684 NA other upstream 902205 11878329 ~ 11880035 (+)
G366973 NA other upstream 1353530 11425642 ~ 11428710 (+)
G366748 NA other upstream 1805088 10976682 ~ 10977152 (+)
G365197 NA other upstream 2933086 9848703 ~ 9849154 (+)
G364850 NA other upstream 3553009 9228838 ~ 9229231 (+)
G368440 NA other downstream 324150 13108696 ~ 13109134 (+)
G369763 NA other downstream 980701 13765247 ~ 13769296 (+)
G370360 NA other downstream 1471257 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 1536558 14321104 ~ 14325895 (+)
G370414 NA other downstream 1583126 14367672 ~ 14368161 (+)

Expression


Co-expression Network