G369447


Basic Information

Item Value
gene id G369447
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13381967 ~ 13440360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU419892
gaagacagctttagaagaaaataatcagcttcagtaggatgaagacagttttagaagactgtaatcggcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaacatatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaagaaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagatagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtagtcagcttcagtaggattaagacagttttagaataatgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagatatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaataaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtaggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcggtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttctgtgggatgaagacagctttagaagactgtaatcagcatccatgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaaaatatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaataaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtaggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagac
>TU419909
gcttcagtgggatgaagaccgttttagaagactgtaatcagcttcagtaggatgaagacagctttagaagactgtaatcagcttccatgagatgaagacagctttagaagactgtaatcagcttcagtggtatgaagacatctttagaagactgtaatcagcttcagtgggattaagacagctttagaagactgtaatcagcttcagtgggatgaaaacAGCTTTAGAacactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacatctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactataatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagaaaataatcagcttcagtaggatgaagacaattttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaaaatatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaagaaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagatagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtaggattaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaaaatatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaataaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtaggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagac
>TU419907
atcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacatctttagaagaaaataatttgcttcagtgggatgaagacagctttagaagaaaataaccagcttcagtggaatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaagaaaataatcagcttcagtaggttgaagacagttttagaagactgtaatcggcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagtttcagtgggatgaagacagctttagaagaaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtaggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagatatctttagaagaaaataatcagtttcagtgggatgaagac
>TU419901
cagttctagaagactgtaatcggcttcagtgggatgaagacagcgtTAGAAGactataatcagcttcagtgggatgaagaccgttttagaagactgtaatcagcttcagtaggatgaagacagctttagaagactgtaatcagcttccatgagatgaagacagctttagaagactgtaatcagcttcagtggtatgaagacatctttagaagactgtaatcagcttcagtgggattaagacagctttagaagactgtaatcagcttcagtgggatgaaaacAGCTTTAGAacactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacatctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactataatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagaaaataatcagcttcagtaggatgaagacaattttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaacactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagttttggaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaaaatatctttagaagaaaataatcagtttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtaggattaagacagttttagaa
>TU419903
gctttagaagactgtaatcagcttcagtgggatgaagacatctttagaagaaaataatttgcttcagtgggatgaagacagctttagaagaaaataaccaCCTTCAGTgaaatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacatctttagaagaaaataatcagtttcagtgggatgaagacagcttcagaagaaaataatcagcttcagtaggatgaagacagttttaaaagactgtaatcggcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttccatgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacatctttagaagaaaataatttgcttcagtgggatgaagacagctttagaagaaaataaccaCCTTCAGTgaaatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacatctttagaagaaaataatcagtttcagtgggatgaagacagcttcagaagaaaataatcagcttcagtaggatgaagacagttttagcagactgtaatcggcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagagagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaaggcatctttagaagactgtaatcagcttccatgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttccgtgggatgaagacagctttagaagactgtaatcagcttccatgggatgaagacagctttagaagactgtgatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagaaagctttagaagactgtaatcagctttagtgggatgaagatagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttccgtgggatgaagacagctttagaagactgtaatcagcttccatgggatgaagacagctttagaagactgtgatcagcttcagtgggatgaagacaactttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagctttagtgggatgaagatagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggattaagacagttttagaagaatgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatcagcttcagtcggatgaagacatctttagaagaaaataatccgtttcagtgggatgaagacagcttcagaagaaaataatcagcttcagtaggatgaagacagttttagaagactgtaatcggcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagagagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcattttccatgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagctttagtgggatgaagatagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttctgtgggatgaagacagctttagaagactgtaatcagcatccatgggatgaagacagatttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttccatgggatgaagacagttttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagaaaataatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagaaaataatcagcttcagtaggatgaagacagttttagaagactgtaatcggcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagctttagaagactgtaatcatcttcagtgggatgaagacagctttagaagactgtaatcagcttcagtgggatgaagacagttttagaagaatgtaatcagcttcagtgggatgaagacagctagagaagactgtaatcagcttcagtgggatgaagacagttttagaagactgtaatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU419892 False 1726 lncRNA 0.40 2 13381967 13399369
TU419909 False 1219 lncRNA 0.39 2 13381967 13391383
TU419907 False 703 lncRNA 0.39 3 13384607 13435746
TU419901 False 1011 lncRNA 0.40 2 13390235 13393925
TU419903 True 3380 lncRNA 0.41 4 13404303 13440360

Neighbor

gene id symbol gene type direction distance location
ier5l LOC106570852 coding downstream 261671 13117989 ~ 13120296 (-)
crata LOC106570862 coding downstream 294758 13058887 ~ 13087209 (-)
cdk9 cdk9 coding downstream 330034 13047918 ~ 13051933 (-)
crb2a LOC106570879 coding downstream 355812 12985005 ~ 13026155 (-)
LOC110523222 LOC106570907 coding downstream 586885 12782216 ~ 12795082 (-)
ndor1 ndor1 coding upstream 103868 13544228 ~ 13558173 (-)
lrsam1 lrsam1 coding upstream 139984 13580344 ~ 13601020 (-)
pole3 pole3 coding upstream 168222 13608582 ~ 13612833 (-)
zgc:55461 tubb4b coding upstream 326125 13766485 ~ 13770596 (-)
glipr2 LOC106570345 coding upstream 341737 13782097 ~ 13797656 (-)
G369479 NA non-coding downstream 7098 13368697 ~ 13374869 (-)
G369321 NA non-coding downstream 107808 13273870 ~ 13274159 (-)
G369318 NA non-coding downstream 111417 13270165 ~ 13270550 (-)
G369307 NA non-coding downstream 116369 13265334 ~ 13265598 (-)
G369281 NA non-coding downstream 141570 13240170 ~ 13240397 (-)
G369522 NA non-coding upstream 37251 13477611 ~ 13480681 (-)
G369540 NA non-coding upstream 70092 13510452 ~ 13510679 (-)
G369546 NA non-coding upstream 73751 13514111 ~ 13514310 (-)
G369649 NA non-coding upstream 128963 13569323 ~ 13569573 (-)
G369651 NA non-coding upstream 130844 13571204 ~ 13571423 (-)
G368921 NA other downstream 675875 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 1245177 12134052 ~ 12136790 (-)
G365752 NA other downstream 4191869 9189669 ~ 9190098 (-)
G364754 NA other downstream 4331259 9047542 ~ 9099000 (-)
G364322 NA other downstream 5077784 8303267 ~ 8304183 (-)
G370333 NA other upstream 766830 14207190 ~ 14208705 (-)
G370635 NA other upstream 986978 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1552768 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 1683115 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 2255732 15693396 ~ 15707607 (-)

Expression


Co-expression Network