G369685 (LOC106570334)


Basic Information

Item Value
gene id G369685
gene name LOC106570334
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13650105 ~ 13651795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420170
aatttttttttacaagaggCACTTTCATTATAAgacatttattgaatatattAATCAAAATAAAGTGATATAAATTAACATATTACATTCTCGGTCCACTATTGTTTATATTCTGTGCACCTCGAAAAAGGAGGTAATATCCAAAACATGTCACTCCATCGTTAAGTGAAGTCTGTACAGATAGAGACAATACGAAACAGACATATATACCTAATGACAAACAAATCAACATTGCCTAACTGTACAAAGTATAGTAAATACATATTTACAAGTCATCACTACAATAATTAAACATGAATAACTTACAAAAGTCCATTTAAAACCTCTGTGTCTATAACAATGATATTTCATATTTCAGAGTGTAAACCATGAACACCGGTGCATTTATATTCTTGCCCATCAAATTTGATAGGAGGTCCACTGACAGAGGTCATTTGTAGAATGCACACAATCACCCACAGATCTGTCACTTACTGAACACAAGCAAAACAGACAAGTGAAAAGGGCAGTAAGGCTATAAAGGCGTTTGTCAGAAGGGATGCTACGCAAATGTCTCTGTGAGATTGCCTGTCTGATATTCAGATATTCTAACCTTTCTCATTGGGTAGTTATAAGTACAGTCCCACAGAGTACAATTCACCATTCCAAACTACAGTAACACAGAAGCACCCCCAATTGTCTTTtaaattcagtcagtcagtccatcacTGAAGTTATATGGAGGTGCTGATTTTCGGGTGTGAGTGAAGACCAAACCAAAACCGTTGGATTATGGGGGGAGTTACCAccagtgagagaatgagagagagaaagtgttggGTACACAATTAGGCAGCTGTAAGAGTAAAACAGTTCACTACATCGCATCAGTGTCCTTCCCCCAGCTGATGGAGCCTTCTGTATGGGGTGAGGGCAGACTGGAGGCAGGGTCAGGGGGGGTCCTGGGGTAAAGGAACACAGACTGGAGACAGGGcagggggAGTCCTGGGGTAAAGGAACACAGACTGGAGACAGGGTCAGGAGGAGTCCTGGGGTAAAGGAACACAGACTGGAGACAGGGTCAGGGGGAGTCCTGGGGTAAAGGAACACAGACTGGAGACAGGGTCAGGGGGAGTCCTGGGGTAAAGGAACACAGACTGGGGTAAAGAGGCTACGGCAGCAATAAACCCTGGGGTTAGGGAACAGGAAACGTTTTTGGAATGAGGAAAGGAGACAGTGAGATTAGGGCAAGGGTGAACCCTAGAGGTGAGGGCCAGAGTCAGGTCAAGGGCATGTTCTTGTGGCGAGAAATGCTAGTGTTTAGACATGGGGCTCAGTGGGAGAAGGTATGGATGTCGTTAGGCAGACTGAGAGAGCCCGGGGAGGCAAGCCCTTGACTTTGGCAGCTCTGGCTGCACCGGCAACGCTGGATCCACATGACGCTACGGGTAAAGTCCTGCCTGCCTCCGGGACAGCGGAAGTGAAGGTTCACCGTGCGCGTCAGAGAAGGAGTGCAGCAGCTGCCGTCGGCACACAAGCCACAGGAACGAGGACGATACTGGCGCGCTGTAGAGCAGCCGGTGAACTTGATCCGGACAGGTTTGCGAGGACGTATTGTGCGT

Function

NR:

description
protein CYR61-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420170 True 1601 lncRNA 0.46 2 13650105 13651795

Neighbor

gene id symbol gene type direction distance location
pole3 pole3 coding downstream 37272 13608582 ~ 13612833 (-)
lrsam1 lrsam1 coding downstream 49085 13580344 ~ 13601020 (-)
ndor1 ndor1 coding downstream 91932 13544228 ~ 13558173 (-)
ier5l LOC106570852 coding downstream 529809 13117989 ~ 13120296 (-)
crata LOC106570862 coding downstream 562896 13058887 ~ 13087209 (-)
zgc:55461 tubb4b coding upstream 114690 13766485 ~ 13770596 (-)
glipr2 LOC106570345 coding upstream 130302 13782097 ~ 13797656 (-)
si:dkey-220k22.1 LOC106570374 coding upstream 241141 13892936 ~ 13973261 (-)
LOC110523244 LOC106570388 coding upstream 321503 13973298 ~ 13982903 (-)
scai LOC106570398 coding upstream 339502 13991297 ~ 14030388 (-)
G369662 NA non-coding downstream 33159 13616635 ~ 13616946 (-)
G369660 NA non-coding downstream 34598 13615276 ~ 13615507 (-)
G369641 NA non-coding downstream 44053 13605544 ~ 13606052 (-)
G369653 NA non-coding downstream 72610 13577194 ~ 13577495 (-)
G369643 NA non-coding downstream 74823 13575012 ~ 13575282 (-)
G369691 NA non-coding upstream 7969 13659764 ~ 13660122 (-)
G370031 NA non-coding upstream 32361 13684156 ~ 13685111 (-)
G370036 NA non-coding upstream 37737 13689532 ~ 13689958 (-)
G370042 NA non-coding upstream 47383 13699178 ~ 13699429 (-)
G370056 NA non-coding upstream 61068 13712863 ~ 13713105 (-)
G368921 NA other downstream 944013 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 1513315 12134052 ~ 12136790 (-)
G365752 NA other downstream 4460007 9189669 ~ 9190098 (-)
G364754 NA other downstream 4599397 9047542 ~ 9099000 (-)
G364322 NA other downstream 5345922 8303267 ~ 8304183 (-)
G370333 NA other upstream 555395 14207190 ~ 14208705 (-)
G370635 NA other upstream 775543 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1341333 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 1471680 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 2044297 15693396 ~ 15707607 (-)

Expression


Co-expression Network