G369770 (LOC106570345)


Basic Information

Item Value
gene id G369770
gene name LOC106570345
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13782269 ~ 13797757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420263
CCATTTATTGCCCGTTGTATGTCAACACAGTGCAGTCTCAGTCTATATGTCAACATGTTTGATAAACATCATTGAATACATTTAAAAAGCGACATTTCTCTATTCATGGACAGTAAATTACAAAAACGTGCACGAGATTAAAGGCATTACATTTCGGGTTTTAAGTAACTGTCCAGCGTTTTCTACGAAATATGACCTACAGCTAATcgcattagctcaaccgtcccgcgggtGAATGGCTTGgacataccccaacaacagaatggtgtgggagtataCCCGTCATTAGAAATGTTCATGCAAGTTGACCACTGATTGGCCTGCTCAGCGAGCCAACGTGACATCAtgttctatgaggaaatagcaagcatttaTGAAACTGTCTATTTGaggtggattttttttctccagtttatgctttggccacaaatacgatTATAGGACGAGTTCAAAGCCAAATAACTCGAGGTAACAGAAAAATGAATTTATAAAAGAAACTGTCCGGTGAAAATCTTACTTGTATATTGCAGTTATGAAAAAATACCCATAACCATTAAAATTATTTCCTATTAAGACAACGTAAAATCCATTTATACAGATTTCCCAAATTACTGTTGTTGGTTAGAAAATAACAATGTAAGGGTATCATTTGAGATAGAAGTTAAAAAAGTTAAGGTCAGGTTTGTCTCGCAACGGCCGTGCAACGGCCGTCTACACTGATGGCTCCTGGCAACTGCGTGGCGCGTTCGAATGGCGCCATCTATGGAAAACAATGAACTAACAAAAAACGATTCTTAGCCTTCCAAAAGAGGACAAATCATAGCAACAACCAAAGATAACAGCAACAACGTGTTTGCCCAGATAAGCACCCGTTCCTATAGAAACCTTTGGGAGTGCcggcatacatacagtacatatggcTCAGACTAAAGTGTGCTTCCTTTGGTTTTCACGTTGTCATGGAAATAGCCTGGGTTGGTGATGTTGCCCGCTGGATCGTAGAACGCCACGGCGATAAACGTGCCCCGCCCACTGGTCGCCAAACCCACGCCTACTTGCTTTGAGGACTTCCAGACCATTTGAGTGAAATTACCTGCTCCACTCTGAAAACCAGGGGATGAGAAATTATACTTCTCAATCTCCTTGTACCAAGACTCGGCCACATCTGATCCAGTAGGGGTCGCTGTGCTGGAGCCAGAGCAGTAGAATATGTTCTCCCCGTGGCCTTTGCCACTATTCATCAGTGTGTTGATGCTCACCAGGTGAGCCGCCCAATCCTGGGCCTCCCTAGTGAGGGCAGGGCTTAGCACCAGAGGTAATGCCCCGTGCTGGCTCCGGTATTGGTTGAGAGACTTCAGAAGAGCCCGGCCGAACTGGCCAAGCTCATTGGCTGACAGTGAGTTCACGGCCAACGCCTGCATTCTCGAAGTGACGACCTCCACTGGTTTATCGGTAACTTTCGACCCTTTTGGCATCACATTCTGAGCGTGGTAACCGGGGTTGCTGATGTTGCCAGCCGGTTTAAAGTGTGCCACCACGACAAGCATCCCCGTGCCACCGTTTGCCATGCCGACGCCCACCTCCTTGGAGCTACGCCACACCAGTTGTGTGAACTGCCCTGTTTTGTCCTGATGTCCTGTTTTGGAGAAGTCATAGTTCTCCTCTTGTTTGTACCAGGCGTCCACCACCTCTTGACCCGTAGCAGTGATGCCCGCTGACCCCGTCTTGGCCCAGATATTTTCACcatggggggaggaggagttcTTCAGCACCCGCTCTCCCAGTAGAGTTTCTGCCCATGCCTGCGCCCCCTGACTCAGGGCTGGGTCCAGTGTGAGGGCTGGGGCTCCGTGTGCCATCCGCTGGTTGTTACATGCCCGTAGGAAGTCTCTGTGGAACTGGCCCAGGTCAGTGCCGTTCGCCTGAGGAGGGGCCTTATATGCAGGTGAAGAGGATCTGGCAATTTTAGATTGGGGTACACTCAGGCCCCCTCCTTCTCCGGCTGTGGGGAAACATTTGGGGGCTCTAGAGGTGGAGCTACCCAGTGGTAGGACATTCTTCTCAAAGAAGCCCGCGTTGCACATGTTGCCAGCTGGGTGGTACTGGCCCACTACAAAGATTGTTTGCCCATCTGTGGCCAGGCCCACACCTACCTCACTGCAGTCCTTCCAAACCACCTGGGTGAAGTGACCTGTACCGGAGCTGAAGCCAGGTTTATTGAAGTGGTAATCTTTGATTTCACTGTACCAACTGTCCACTGCATCCTTCCCAACAGGTTTTTTGGGGGTTGAGCTGTATGCATAGTAAAGGTTTTCTCCGTGATTGGTGGAGCTGTGCTTCAGGCTTTTGATTGACAGAAGATGGTCTGCCCATTTCTGGGCGGAGTTACACAGGTCTCTGCTCAGAGCTAGGGGCGGGGCACCATGCTTCCTGCGATAGTCATTATGAGCATCCACAAACTCCCTCTCAAAACCACAGtCTGTCATTGTTTTGTTCTTCCGCTGAACTGCAAATCGGAGGGCCATGTTGACACTGCAGCCTCAGCTTGGTCCTTTTGGGTGGGAGTAAAGTGTAGTGAATTATATTGAGATTTCTTTTGCACCCTACATCTAGAGAGTACACTCATCTGACACACAGGAAGGAAGCTGTGTCACCACTTGCGAACGTTCCTCTATTGTTCATAGCAACACACCGCAAAATGTAAACAAGAAAACAACACACACGTCAGTCAATGATACTTCTGATTCTGTTGTGACAGAGTGGCCTATTGAGGTGTGATGTTGTCCGGCGTATTCAATCTAAACCGCTAACC

Function

NR:

description
uncharacterized protein LOC109868363 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420263 True 2812 lncRNA 0.48 12 13782269 13797757

Neighbor

gene id symbol gene type direction distance location
lmo4a lmo41 coding upstream 97129 13668173 ~ 13685140 (+)
ccn1l1 LOC106570334 coding upstream 130434 13647485 ~ 13651835 (+)
LOC118964562 NA coding upstream 138141 13613034 ~ 13644128 (+)
LOC118964768 NA coding upstream 176448 13605700 ~ 13605821 (+)
LOC118964766 NA coding upstream 176820 13605324 ~ 13605449 (+)
LOC110523240 fpgs coding downstream 9028 13806785 ~ 13818030 (+)
gpr107 LOC106570369 coding downstream 20570 13818327 ~ 13850807 (+)
ncs1a ncs1 coding downstream 62695 13860452 ~ 13882141 (+)
arpc5l arpc5l coding downstream 188938 13986695 ~ 13990227 (+)
LOC110523252 LOC106570453 coding downstream 330802 14128559 ~ 14142466 (+)
G369742 NA non-coding upstream 58319 13723686 ~ 13723950 (+)
G369741 NA non-coding upstream 59827 13722083 ~ 13722442 (+)
G369734 NA non-coding upstream 66242 13715784 ~ 13716027 (+)
G369730 NA non-coding upstream 68846 13713139 ~ 13713423 (+)
G369722 NA non-coding upstream 78401 13703548 ~ 13703868 (+)
G369785 NA non-coding downstream 2598 13800355 ~ 13854169 (+)
G369805 NA non-coding downstream 58807 13856564 ~ 13856861 (+)
G369820 NA non-coding downstream 86519 13884276 ~ 13886502 (+)
G369819 NA non-coding downstream 89046 13886803 ~ 13892285 (+)
G369892 NA non-coding downstream 186619 13984376 ~ 13984624 (+)
G369763 NA other upstream 12973 13765247 ~ 13769296 (+)
G368440 NA other upstream 673135 13108696 ~ 13109134 (+)
G367684 NA other upstream 1902234 11878329 ~ 11880035 (+)
G366973 NA other upstream 2353559 11425642 ~ 11428710 (+)
G366748 NA other upstream 2805117 10976682 ~ 10977152 (+)
G370360 NA other downstream 458046 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 523347 14321104 ~ 14325895 (+)
G370414 NA other downstream 569915 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 1006904 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 1250421 15047739 ~ 15054353 (+)

Expression


Co-expression Network