G369820


Basic Information

Item Value
gene id G369820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13884276 ~ 13886502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420336
tcacctcagctgcagtgaaggagagaccgcatgttttcgttgcaggccgtgtcagtggcactgtattgacctcaaagcgggcaaaaaagttatttagtctgcctgggagcaagacatcctggtccgtgactgggctggatttcttcctgtagtccgtgattgactgtagaccctgccacatgcctcttgtgtctgagccgttgaattgagattctagtTCCCGGGCGTTCCCGGGCGTCCCGGGGTTctaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaaatgtatactgttacataggcaagtcagttaagaacctatttttatttacaatggtggcctaggaacagtgggttaactgccttgttcggttactggcccaacgcactAACCTACCTAACGCCCCAAAGAGAAGAGGCCCAGAATTCCCAAAGTTATGAAAATAGTTCACCCTCTCCTATCTACAATAGTAGCATCCTATTTACAACCAATCTGTACATCATGCTCATTTTTACAATGAGCAGGACGGTACCTGAGGGAGTAAGAGCACATAATCTCTCTAGGTGGAAGGATGGAAAGATATGTATTGCAGTGATAACTGAAACTGGGCATGTGATGAAACCGTTCTCTCGTACTGTGTAAATAGTTATCTGAAATCGCATAATTCAAACCAGTTTGTGGTGCATTCAAAAGCATTGGGAAAGAGCTCTGCCTTCCATATCCGTATGCTTTTGAATGCACCGCTAAAGTTGTGGCTAGGAGTCCAGCTACCGATAGGTTTACCATTAAACTACCGCAAGAGTCTGAACTGAGTTTGAAGCCAGATGTTAAGTCGTAGTGGATTTCACTGTTAGTTTTATTCCAAATAGTTGCAGTTTTAAAACTGACGATTGTTTATTTTTGATGAATGTCAGTGTACTGTTGCTTGTATGCGTCTGTTTGTTGTCGTCCTGGCTATAATAGCTACGATACGCGCCTCGGCGTAACTGAACTGCGGGACAGCAGTATTTGGCAAACGGTAGCGAACTGTAAGTTCACTTTTACAACATTGTTACTACATCCTATTTTAAATACATGTGAAATGATCTTATGATGATGCTCCAGCTGTCTTCCCAATATTCACTGCGGTAATCAGGGCTCTAATGGTTTTCCGTTTGCGTTACAAGCAAAAGCACAGAATAATgacattaaaaaataaatgatatCACACACTGTTGAAAGATATTTGGAAATGTTTTGAGTTGAAACAGAGTCATCTTAGCTAAATCAAACACATGCTTTTTGATTCAGAGCGTTGTAGTCACCAATCCTGTACCTTTGTTGCGGTAGCCAACATGACAGTTAGCCTTGTCTGGTTTTAAATATGTTCGCAACACCATTGCTGCGGTCACTAGAAGACAGAAAACGAGGATATGATGAGAACAGTGAAAACATGACCTATCACCTCAAATATGACAACCATGGTGAAATGTTCAAATTCAAAATCTGATCTAGTGGCTAACACTACCGCATTTCAGAAATGATCTGCCTGTTTCCGCGTGGGAACGAATCATGGACCAGCCGCTATTTTGGCACAAACTCTCCTCAGTTATAATAACCTAACTGGTCAATAAAACATCTTAAAAATAATAGTTGGAAACAGATGAGCTGTCACTCCGTATACACCGGCACACATAGGTCTCGACAGTCGACCACCGTGCAGAGTTCCGCACTTCACAGTTTTGCTGGTTGGCTCGATCTTGACCCACTCCACCCTTTACTGCCACATAGATCCACAAGAACCTGCAGACAGAAGCTACTGAAATCAGCCCAAATAATGGTAGTTCTTCTTTTGTTCCTTTACTAGCTCTAAACAGGGGTTGGATTTATGATGTATAAAATCCTAGATTGCATATGTTATGTATTGGACAATGAGAGGCATTTAAACTACCGTCCACCATACTGCTACTCAGTCCTCCATAAGAATtggtatttattttattaaacctttatttaactaggcaagtcagttcttacttacaatgacggccaaccccgGCCAAATGTGCGcccgatcacggctggttgtgatacagcccggaatcaaaccagggtctgtagtgatgcattagaccgctgtgccactcgggagccaaattAATGgcattctacagtatttcaattaaatattTCAAAGGACACGATTACATGTATTaaagttttgtttttttgtcgT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420336 True 2227 lncRNA 0.43 1 13884276 13886502

Neighbor

gene id symbol gene type direction distance location
ncs1a ncs1 coding upstream 2135 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 33469 13818327 ~ 13850807 (+)
LOC110523240 fpgs coding upstream 66246 13806785 ~ 13818030 (+)
lmo4a lmo41 coding upstream 199136 13668173 ~ 13685140 (+)
ccn1l1 LOC106570334 coding upstream 232441 13647485 ~ 13651835 (+)
arpc5l arpc5l coding downstream 100193 13986695 ~ 13990227 (+)
LOC110523252 LOC106570453 coding downstream 242057 14128559 ~ 14142466 (+)
LOC110523253 LOC106570436 coding downstream 261930 14148432 ~ 14231585 (+)
mmp11b LOC106570480 coding downstream 385803 14272305 ~ 14308719 (+)
LOC110523258 LOC106570496 coding downstream 459131 14345633 ~ 14347412 (+)
G369805 NA non-coding upstream 27415 13856564 ~ 13856861 (+)
G369785 NA non-coding upstream 30107 13800355 ~ 13854169 (+)
G369770 LOC106570345 non-coding upstream 86519 13782269 ~ 13797757 (+)
G369742 NA non-coding upstream 160326 13723686 ~ 13723950 (+)
G369741 NA non-coding upstream 161834 13722083 ~ 13722442 (+)
G369819 NA non-coding downstream 301 13886803 ~ 13892285 (+)
G369892 NA non-coding downstream 97874 13984376 ~ 13984624 (+)
G369878 NA non-coding downstream 104846 13991348 ~ 13995454 (+)
G369936 NA non-coding downstream 141171 14027673 ~ 14034826 (+)
G369942 NA non-coding downstream 149256 14035758 ~ 14035999 (+)
G369763 NA other upstream 114980 13765247 ~ 13769296 (+)
G368440 NA other upstream 775142 13108696 ~ 13109134 (+)
G367684 NA other upstream 2004241 11878329 ~ 11880035 (+)
G366973 NA other upstream 2455566 11425642 ~ 11428710 (+)
G366748 NA other upstream 2907124 10976682 ~ 10977152 (+)
G370360 NA other downstream 369301 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 434602 14321104 ~ 14325895 (+)
G370414 NA other downstream 481170 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 918159 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 1161676 15047739 ~ 15054353 (+)

Expression


Co-expression Network