G369921 (LOC100380848)


Basic Information

Item Value
gene id G369921
gene name LOC100380848
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14039527 ~ 14040898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420443
ATCCCCTCCCCAATCACCCTGATCTGGTTTAAAAAACAGCAGCAGCATACTTAAGTTGCTGTCTTCTGTGGAAATAATATCTGTGAAGAAATTACGGCATGAGGAGAAAACTGTTTTCTTCTATAGATTACAGCTGAGAGTTCATAGTATCAGGTCTGACATGCCTTTAGCGTAATTGCAATATCGACCCAGTTGGAACGATAAAACTCACATCACTGAATTCCATTCAATAGTTAACATGGAATTCTGAGACACAGTGCAATTCAAGGAATTCATTCCGTGACAGCCTATGATAATATCCTTATAAAGAAGCAGAGTAGATGAATGACCGTTGAATGTGCACAATGCTGCAAAAACATATTCATACAAATACACTGTTGGCTACAATTACATTTAATAGGAACAGCGTGTCCCATTTACTCACATCAAATAGAATTTGAGGGAGTAGAAATTAAAATCAGGAGTATTGGGGTGAAGTATAAAGATAGGGCTTCAATTGAAATGAAGGGCCAACAGTACTATTGAGTCAATTCATCCAATGCAACAATGTTAATCTACAAAAACAAATATGCATTTGGCAACATCAAATACTATCAAGGGAATGAGGCAGGACTGAGGTGGGATATTTCAAGAAAGAAAATGTTCAATAACAGATCGAGAAATGCAAGTCCCGTTGGGAGAAGCTTGGGGGGTGGGAGGGGGTTGTTGACAGTGGGGACAATAGCCCAGTCCCAAAACCACTAACCCTTTGCAGATGACAACAAACCAGATGGGTTTAAGAAATATAGATAGATCCCCTAAACGTATTACAAGATTCAGTCCAGAAGCATCAATCACTTAGGTTTTTGCAGATCTAAAGAGGTAAGAGCTATGATTAGTTCTGGACCAGACCAAGGTGAAGCCATTGTATTGTCATTTCTTAGTTACACCTATCCACTTCCTTAAGACTGCAAACGGGAAATGGGTGAGGGAAAGAGGCAACAGGCTATTTTTGGAGTGAACAAAATGGCTCCTGTGATTAGAGGAAATAaggtgttgttgttctgggaggGATGACCCGCTCCGAGTCGGGCACGGCGCGGAACAGCTTGGGCTCCCGGGTGTTCACGTCTTTGAAGACCATGATGGAGGCAATGTTTCCACAGCGGTAACAGTAGTTGGGCGCGGACCACACCGTCACCAGCTTCTCGTCAAACATGAACTTGTAGCCCTCGTGGACCAGCTGGTGTGCACGGCAAATCAGCTTCAGATTATTGA

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420443 True 1257 lncRNA 0.42 2 14039527 14040898

Neighbor

gene id symbol gene type direction distance location
arpc5l arpc5l coding upstream 49300 13986695 ~ 13990227 (+)
ncs1a ncs1 coding upstream 157386 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 188720 13818327 ~ 13850807 (+)
LOC110523240 fpgs coding upstream 221497 13806785 ~ 13818030 (+)
lmo4a lmo41 coding upstream 354387 13668173 ~ 13685140 (+)
LOC110523252 LOC106570453 coding downstream 87661 14128559 ~ 14142466 (+)
LOC110523253 LOC106570436 coding downstream 107534 14148432 ~ 14231585 (+)
mmp11b LOC106570480 coding downstream 231407 14272305 ~ 14308719 (+)
LOC110523258 LOC106570496 coding downstream 304735 14345633 ~ 14347412 (+)
LOC110523259 odf2 coding downstream 310555 14351453 ~ 14367540 (+)
G369943 NA non-coding upstream 1433 14037858 ~ 14038094 (+)
G369942 NA non-coding upstream 3528 14035758 ~ 14035999 (+)
G369936 NA non-coding upstream 4701 14027673 ~ 14034826 (+)
G369878 NA non-coding upstream 44073 13991348 ~ 13995454 (+)
G369892 NA non-coding upstream 54903 13984376 ~ 13984624 (+)
G369947 NA non-coding downstream 14596 14055494 ~ 14055795 (+)
G369948 LOC106570668 non-coding downstream 17477 14058375 ~ 14059295 (+)
G369949 NA non-coding downstream 18586 14059484 ~ 14059722 (+)
G369950 NA non-coding downstream 19317 14060215 ~ 14060713 (+)
G369952 NA non-coding downstream 20820 14061718 ~ 14061936 (+)
G369763 NA other upstream 270231 13765247 ~ 13769296 (+)
G368440 NA other upstream 930393 13108696 ~ 13109134 (+)
G367684 NA other upstream 2159492 11878329 ~ 11880035 (+)
G366973 NA other upstream 2610817 11425642 ~ 11428710 (+)
G366748 NA other upstream 3062375 10976682 ~ 10977152 (+)
G370360 NA other downstream 214905 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 280206 14321104 ~ 14325895 (+)
G370414 NA other downstream 326774 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 763763 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 1007280 15047739 ~ 15054353 (+)

Expression


Co-expression Network