G369948 (LOC106570668)


Basic Information

Item Value
gene id G369948
gene name LOC106570668
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14058375 ~ 14059295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420470
CAAGTAAAAAAATGCTGGGCAGGACATtcatttgcccattattttggctactatGTCTAAGCCCcaataggatgacaatgccccccatccacagggcacaagtGGTCACTAAATGGTTTGATGAcaatgaaaacgatgtaaaccatatgccatggccatctcatGTACCAAATCTCAACCCAATTTAACACTTGAGAGATTCTGGAGTGTTGTGTGAGatagcgttttccaccaccatcaacaaataaaacaaatgatggaatttcatATGGCATCCCTCCAATAGGTCCAGACACGTGTAGAATATATGCCAAGGTACATTAAAACTGTTCTGGCCCAACACCCCAAATAAAACACTTTATGTtggcgtttcctttattttggtagttacctgtaCATACCACCTTAATGGATACGTGTGGCATACAGACACTAACTCAAAAGGTATTAGACATTGGCCCTCTCCTCAGGCTCCAGTTTGGCTAGTCAGAGCATCTAATGATAGTAATGAAGGTAGAGACTGGTCTTCTCTCATAATCAACCCGCTGCCTGTGGCTTGCCATCACAGACAGTCTATTCTCCGGCTCCATCCGCAAAAGGACAGAGAAACTCAATGGGGCGTCTTGCTCCTCTTCCAGCAACTGCCGCGTGTCAAAGGCACTGGCAAACTGGTCCGTACGCTCCTGGTAGGTGAAATCCAGCCGTAGCATTAGGTCCCTGGTGTCATTCCCTGCTGGCAGCTTAAAGGTGGCTTGGACAAAGACCACATACCAGCCTGCCATGGTCACCTGGATGTGGGTCCTGTTCTTGGTCAGGAACATGCTGCCaatctccttcccctcctcttcccacTCCAGCTCACCAAATATCTGTTTGGTCTGTTTGGTGGGGTGAGAGGCTGTTGGGAACCAAACAATAGAG

Function

NR:

description
uncharacterized protein LOC110523247

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420470 True 921 lncRNA 0.47 1 14058375 14059295

Neighbor

gene id symbol gene type direction distance location
arpc5l arpc5l coding upstream 68148 13986695 ~ 13990227 (+)
ncs1a ncs1 coding upstream 176234 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 207568 13818327 ~ 13850807 (+)
LOC110523240 fpgs coding upstream 240345 13806785 ~ 13818030 (+)
lmo4a lmo41 coding upstream 373235 13668173 ~ 13685140 (+)
LOC110523252 LOC106570453 coding downstream 69264 14128559 ~ 14142466 (+)
LOC110523253 LOC106570436 coding downstream 89137 14148432 ~ 14231585 (+)
mmp11b LOC106570480 coding downstream 213010 14272305 ~ 14308719 (+)
LOC110523258 LOC106570496 coding downstream 286338 14345633 ~ 14347412 (+)
LOC110523259 odf2 coding downstream 292158 14351453 ~ 14367540 (+)
G369947 NA non-coding upstream 2580 14055494 ~ 14055795 (+)
G369921 LOC100380848 non-coding upstream 17477 14039527 ~ 14040898 (+)
G369943 NA non-coding upstream 20281 14037858 ~ 14038094 (+)
G369942 NA non-coding upstream 22376 14035758 ~ 14035999 (+)
G369936 NA non-coding upstream 23549 14027673 ~ 14034826 (+)
G369949 NA non-coding downstream 189 14059484 ~ 14059722 (+)
G369950 NA non-coding downstream 920 14060215 ~ 14060713 (+)
G369952 NA non-coding downstream 2423 14061718 ~ 14061936 (+)
G369953 NA non-coding downstream 2791 14062086 ~ 14062313 (+)
G369922 NA non-coding downstream 15458 14074753 ~ 14089971 (+)
G369763 NA other upstream 289079 13765247 ~ 13769296 (+)
G368440 NA other upstream 949241 13108696 ~ 13109134 (+)
G367684 NA other upstream 2178340 11878329 ~ 11880035 (+)
G366973 NA other upstream 2629665 11425642 ~ 11428710 (+)
G366748 NA other upstream 3081223 10976682 ~ 10977152 (+)
G370360 NA other downstream 196508 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 261809 14321104 ~ 14325895 (+)
G370414 NA other downstream 308377 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 745366 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 988883 15047739 ~ 15054353 (+)

Expression


Co-expression Network