G369972


Basic Information

Item Value
gene id G369972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14143417 ~ 14145104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420495
ACAAGATGGTATTAGTCTACAGTCTAACACTATTTCAGTAGCAAGATGGTATTAGTCTACATTCTAACACAATATCAGTAGCAAGATGGTATGTTCCTACTGAAAAATTGCCTAGACAGGAATTGGTACAAATTGACAGTCTGTGACTAGCGATGGTTCAATGTGGCTTTATTGTACTAAAGTGAGGTAGTAAGAGATACTGTGCTGAGTATTTTGACACTGAATGAAATGGGAACACTCCTAGTTCAAACAGCTTGGCTTGGTCGATCAGTGTGTCTATAATCATGTCTTgatcttaaaggcccagtgcagtcaaaaacttgatttccctgtgttttacaTATTTCCACACCGAGGTTGGATTCAtactgaaattgtgaaaattatgataatgcccttttagtgtaagagctgtttgaaaatacttcctgaaatttcagcctgttttggtgggagggagttttggccttccatggtgacatcaccatgtggtGAATTGGTTAATAAAgatttccaaacctctctgccaataacagctagttttcagttcccCCTCCCTACTCCCCTAGTCCCTAGCCTCCCTGACAGTCTTAGCCAAgatcttgcttgagaaattgctctttgctaagaagctatttttttttcttttgaccattttaatttcaaacaatcacagtaaggtacttaattgttacctagAAATAATTTGATACTTGTGTGGGGGAAAAAAACCAAGCTGCATTGAACCTTTTAATGAATGTATATAAACAGTGACAAATCCCCCCCCTTGAAGATTCAGTAATGACAAAAAGGAAAGTCTTGTCTTCCTGTGATTCACAAACGTTTGTTGTCAATGATGAATGGTTTATGGTTCTCTAACATTTTCTCGTTCTTGTTTTGCTCTATCACAATTTTTTTCCTTTCCTTTTTTCCATTTTTCCATGGCTCTTGCCTTTCTCccacctcttcctcccctccttgcCCTGTGATTTTTGAGGGCTTGTCCAGGATAGGGCTAGCAGCAAGACAGTAGGCCCCGTGCCACAGTCCGCCTGCCAACCGTCATGCACTGCCATTCTCCCTCTTATCATATCGCTCTGTTTCTCATCCAGCAGACATTCAATTTGTGGACCACAAACTATCTGTTTTACAGCTATATTGAGACTGTTTTAGAAAGCAGCTCACTGCCTCTGGTCTCATCTCTGCCAACCGTTTGACGGTAGACAGCAAATCCTATGTGGCAAAAAGCTACTATAATTGTGGACTTGAGAATAACAGGGCTAGATAGGGAGAATGCATACTCATCATTAAATATAAGAATATATTTTGTAATCCTGCATGTCGATGGCTTTTTCTGTAACATTTATCCTCCGTTGAATTTAACATGGCTGAACAGTCTTTTGTCGTTGTCTGTTTGTTATTCGCACCACATTGTCCTTGGTGTCAGATTAATGTTTGTCATGCCACTGCTACACAGGGCaacaatgtaaattgtccagcGTGTTGTGCTCTGATTTGACATATCCTCCATTGTCTTAAAAATCCTTAACGTCTTTGACTATGTGGAAGGACAACATTGCATTGTTGCCAGTGGCGATTATATAAATCTGTATAGTGATTACATCAGGAATTAGACAATGCTATGTGTAGCCATATTCTTCTCTAAGGGTTCTTCTTTGTGTATTTTC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU420495 True 1688 lncRNA 0.40 1 14143417 14145104

Neighbor

gene id symbol gene type direction distance location
LOC110523252 LOC106570453 coding upstream 951 14128559 ~ 14142466 (+)
arpc5l arpc5l coding upstream 153190 13986695 ~ 13990227 (+)
ncs1a ncs1 coding upstream 261276 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 292610 13818327 ~ 13850807 (+)
LOC110523240 fpgs coding upstream 325387 13806785 ~ 13818030 (+)
LOC110523253 LOC106570436 coding downstream 3328 14148432 ~ 14231585 (+)
mmp11b LOC106570480 coding downstream 127201 14272305 ~ 14308719 (+)
LOC110523258 LOC106570496 coding downstream 200529 14345633 ~ 14347412 (+)
LOC110523259 odf2 coding downstream 206349 14351453 ~ 14367540 (+)
LOC110523261 sptan1 coding downstream 231855 14376959 ~ 14429468 (+)
G369976 NA non-coding upstream 4790 14137903 ~ 14138627 (+)
G369922 NA non-coding upstream 53446 14074753 ~ 14089971 (+)
G369953 NA non-coding upstream 81104 14062086 ~ 14062313 (+)
G369952 NA non-coding upstream 81481 14061718 ~ 14061936 (+)
G369950 NA non-coding upstream 82704 14060215 ~ 14060713 (+)
G369974 NA non-coding downstream 877 14145981 ~ 14147544 (+)
G370022 NA non-coding downstream 99155 14244259 ~ 14251198 (+)
G370442 NA non-coding downstream 164918 14310022 ~ 14310505 (+)
G370443 NA non-coding downstream 166445 14311549 ~ 14311842 (+)
G369763 NA other upstream 374121 13765247 ~ 13769296 (+)
G368440 NA other upstream 1034283 13108696 ~ 13109134 (+)
G367684 NA other upstream 2263382 11878329 ~ 11880035 (+)
G366973 NA other upstream 2714707 11425642 ~ 11428710 (+)
G366748 NA other upstream 3166265 10976682 ~ 10977152 (+)
G370360 NA other downstream 110699 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 176000 14321104 ~ 14325895 (+)
G370414 NA other downstream 222568 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 659557 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 903074 15047739 ~ 15054353 (+)

Expression


Co-expression Network