G369974


Basic Information

Item Value
gene id G369974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14145981 ~ 14147544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420501
GCTTCTCTCTAAACGGTTTCCGGTGGATAACTGTAGAAACAGTATTTTTGTTTACAGTCATGATGATTCTGATTGCTTGACTGACTGGGGACAATATGGTTGCTCCTCATCCAACAACCATATTTATCAGAGTGCATTGTGGGTAGCTGGTGACCGTGGTGAGTACAGCATGGGGTTGTAGCATGTGTCCACTTGCATGGCACAGCAATGTTTCTGATACAGACTGCTTCCTCTCGTCCCTTCTGTTTAATAGCTTGTGAAataggagggaaaagagaggtgTCATGTTTAGGTCAAGTTTAGATCGATTGTCTGTGCTTTAAGGGCTCTTAACCAAGGGAGACTTAATCCCAACTGCATCTTCCCTGGTGAACTTGAGTGATTGGCTGAGTTCCAAAGCTTCTAAATCACTTCCTGTCAATGTaatgtctcctccctctccttaaaggaaaattccaccccaaaactatcttttggtatttgtttcattagtccattttTGAGAAAGttccaaaaatgttttgcatgtcagcaatcaagttttcaagatgtaTAACTTTCAATATACAGAAAAACAGCTGGTATGATAAAAAAAATGCATCACACCGGCTGTATTTTAAAAGTTATATattttgaaaacttgattgctgacatgcaaaatgTGTTAGCGCCTTGCCCTAGCTCCGACCTCGTGTTCACAGAGCTGAAAGGACTAAACCATGAATCCCAATTTAATTCACTCAATTCAGGTCATAAATTGACCTCAACCCTAGTAGGGAGTGCTCTACAAATCTGTAAAGGCGTAGCAGtactttttgttgttgctttttttTCACTCATCTCATGTGCCTGAACAACAAATGCAAGAAAGAATGATTTGTCTTTTTTGTTTACGTTGTGgtgtatttttgggggggaagGTTTGTAGGGTTTTTTTGGATCCCCATTCGCTTTTGCAGAGGCAGCAGCTATTCATCCTGGGTCCACAAAcaaacatgacaagtaacaaaacactgatagacaaggacagtcacacaaggGTGGGATGGTGAGAAAGCGGGTCAGAATGAATGTCTAGCAGATAAATAACTTTTCTCCTAATTTATATATTTGTGTGGCGGAAAACACCAGTCTGGTTATTAACATCaatctttactctctctttctaatgGTTATCTTATTGCTACTATGTAACATTTGTATTGCTACCATGTTAAAAAAATATGAACCATGGGCAGCATTGGTCTAAGGGATGTTGTAAACTGAAGTAGCTTTTTCGAGCTGGGATATGAAGCGTCCACATCTGATAAGTTATTTTTCATGTGTACTCTGCTCTATGTATTTTCATCCTTAAACAGTTGAACTCTTTATGAACCGTGTGTGTTTGTTCGTATGCATAAGTGTATGCTGCGTGTGTATGCGTCTGTATGACACTCTTCTCTTGTTTTTTTGCATGACTACATTTTTGTATGGGTATATACAGTATCTTAGTATTGGAGTTCTATACTGGTGTTTACAGTGTTTGCAACTGAACAATAAAAATTTCAACGATGGTTTCAATTAA
>TU420502
ctttttgttgttgctttttttTCACTCATCTCATGTGCCTGAACAACAAATGCAAGAAAGAATGATTTGTCTTTTTTGTTTACGTTGTGgtgtatttttgggggggaagGTTTGTAGGGTTTTTTTGGATCCCCATTCGCTTTTGCAGAGGCAGCAGCTATTCATCCTGGGTCCACAAAcaaacatgacaagtaacaaaacactgatagacaaggacagtcacacaaggGTGGGATGGTGAGAAAGCGGGTCAGAATGAATGTCTAGCAGATAAATAACTTTTCTCCTAATTTATATATTTGTGTGGCGGAAAACACCAGTCTGGTTATTAACATCaatctttactctctctttctaatgGTTATCTTATTGCTACTATGTAACATTTGTATTGCTACCATGTTAAAAAAATATGAACCATGGGCAGCATTGGTCTAAGGGATGTTGTAAACTGAAGTAGCTTTTTCGAGCTGGGATATGAAGCGTCCACATCTGATAAGTTATTTTTCATGTGTACTCTGCTCTATGTATTTTCATCCTTAAACAGTTGAACTCTTTATGAACCGTGTGTGTTTGTTCGTATGCATAAGTGTATGCTGCGTGTGTATGCGTCTGTATGACACTCTTCTCTTGTTTTTTTGCATGACTACATTTTTGTATGGGTATATACAGTATCTTAGTATTGGAGTTCTATACTGGTGTTTACAGTGTTTGCAACTGAACAATAAAAATTTCAACGATGGTTTCAATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420501 False 1564 lncRNA 0.39 1 14145981 14147544
TU420502 True 753 lncRNA 0.37 1 14146792 14147544

Neighbor

gene id symbol gene type direction distance location
LOC110523252 LOC106570453 coding upstream 3515 14128559 ~ 14142466 (+)
arpc5l arpc5l coding upstream 155754 13986695 ~ 13990227 (+)
ncs1a ncs1 coding upstream 263840 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 295174 13818327 ~ 13850807 (+)
LOC110523240 fpgs coding upstream 327951 13806785 ~ 13818030 (+)
LOC110523253 LOC106570436 coding downstream 888 14148432 ~ 14231585 (+)
mmp11b LOC106570480 coding downstream 124761 14272305 ~ 14308719 (+)
LOC110523258 LOC106570496 coding downstream 198089 14345633 ~ 14347412 (+)
LOC110523259 odf2 coding downstream 203909 14351453 ~ 14367540 (+)
LOC110523261 sptan1 coding downstream 229415 14376959 ~ 14429468 (+)
G369972 NA non-coding upstream 877 14143417 ~ 14145104 (+)
G369976 NA non-coding upstream 7354 14137903 ~ 14138627 (+)
G369922 NA non-coding upstream 56010 14074753 ~ 14089971 (+)
G369953 NA non-coding upstream 83668 14062086 ~ 14062313 (+)
G369952 NA non-coding upstream 84045 14061718 ~ 14061936 (+)
G370022 NA non-coding downstream 96715 14244259 ~ 14251198 (+)
G370442 NA non-coding downstream 162478 14310022 ~ 14310505 (+)
G370443 NA non-coding downstream 164005 14311549 ~ 14311842 (+)
G370444 NA non-coding downstream 164625 14312169 ~ 14312573 (+)
G369763 NA other upstream 376685 13765247 ~ 13769296 (+)
G368440 NA other upstream 1036847 13108696 ~ 13109134 (+)
G367684 NA other upstream 2265946 11878329 ~ 11880035 (+)
G366973 NA other upstream 2717271 11425642 ~ 11428710 (+)
G366748 NA other upstream 3168829 10976682 ~ 10977152 (+)
G370360 NA other downstream 108259 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 173560 14321104 ~ 14325895 (+)
G370414 NA other downstream 220128 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 657117 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 900634 15047739 ~ 15054353 (+)

Expression


Co-expression Network