G370653 (odf2)


Basic Information

Item Value
gene id G370653
gene name odf2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14357446 ~ 14358123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421232
CTGAGACCTCCATCTCTAGCTGAGTCTTGTCCTTCATTTCCTGGGCGTGGCGACCACgccagttctctgctgctgatAGGGCCTCTGCCATCTGATTCTCCTGTGAAGTCACATCCAGTAGCTGGGTGCTGAGCTGCCCGGCGGTATCTTCGCTGCGTTCAGCCCGGTGTTTCTGGGCCCGTGTGGCCCTCTTCAGGTCCTCTTTGTCGGCCTCCGCCTGAAGTTTCAGACCCCGCAACTGCTCCAGCAGGTGACCCATCTCTCCCTGCTGCTGACTGGCCGCCCGCTCCAGGTTCTTGACAAATCCGAAAGCAGAGGGTGAAAAAAAACATACAGGAACAAATTGTTTGCAGAAGAAAACATATTTGTAGTGGGAATGATCTTTTCACTTTTCTTTTACAATAAGGCATAGGCAAAGTATGTAAATATAGCAAAATGAAGCTGCTCCAGAGCAAGATGAA

Function

symbol description
odf2 Enables small GTPase binding activity. Involved in several processes, including centriole-centriole cohesion; cilium organization; and regulation of cilium assembly. Located in centriole; centrosome; and ciliary basal body. Part of centriolar subdistal appendage.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421232 True 461 lncRNA 0.51 2 14357446 14358123

Neighbor

gene id symbol gene type direction distance location
LOC110523260 NA coding downstream 7165 14346815 ~ 14350281 (-)
smarcb1b LOC100380734 coding downstream 24141 14313714 ~ 14333305 (-)
chchd10 chchd10 coding downstream 98314 14255800 ~ 14259132 (-)
LOC118964567 LOC106570461 coding downstream 113711 14243054 ~ 14243735 (-)
LOC118964566 NA coding downstream 132101 14222189 ~ 14225345 (-)
dync2i2 wdr34 coding upstream 71346 14429469 ~ 14433766 (-)
LOC110523265 LOC106570595 coding upstream 76123 14434246 ~ 14438495 (-)
pkn3 pkn3 coding upstream 102695 14460818 ~ 14480420 (-)
slc25a25b LOC106570619 coding upstream 129627 14487750 ~ 14535122 (-)
LOC110523275 NA coding upstream 408053 14766176 ~ 14769160 (-)
G370652 NA non-coding downstream 1153 14355426 ~ 14356293 (-)
G370648 NA non-coding downstream 14908 14342211 ~ 14342538 (-)
G370646 NA non-coding downstream 17931 14339296 ~ 14339515 (-)
G370622 NA non-coding downstream 46940 14310290 ~ 14310506 (-)
G370656 NA non-coding upstream 5414 14363537 ~ 14365844 (-)
G370658 NA non-coding upstream 10502 14368625 ~ 14368840 (-)
G370659 NA non-coding upstream 11944 14370067 ~ 14370272 (-)
G370631 LOC102778734 non-coding upstream 50971 14409094 ~ 14410047 (-)
G370629 NA non-coding upstream 55687 14413810 ~ 14420255 (-)
G370333 NA other downstream 148741 14207190 ~ 14208705 (-)
G368921 NA other downstream 1651354 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2220656 12134052 ~ 12136790 (-)
G365752 NA other downstream 5167348 9189669 ~ 9190098 (-)
G364754 NA other downstream 5306738 9047542 ~ 9099000 (-)
G370635 NA other upstream 69215 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 635005 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 765352 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1337969 15693396 ~ 15707607 (-)
G372122 NA other upstream 1617483 15975606 ~ 15976116 (-)

Expression


Co-expression Network